Evidence map›Paper›PMID 21716279›Full record

ArticleNature methods2011

PSICQUIC and PSISCORE: accessing and scoring molecular interactions.

Bruno Aranda, Hagen Blankenburg, Samuel Kerrien, Fiona S L Brinkman, Arnaud Ceol, Emilie Chautard, Jose M Dana, Javier De Las Rivas, Marine Dumousseau, Eugenia Galeota and 30 more

Abstract readLetter
In one paragraph

Article in Nature methods, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 156 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
156citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

156 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Proteomic analysis of liver fibrosis reveals EFEMP1 as a new modulator of focal adhesion and migration of hepatic stellate cells.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2025
    Article
  6. Article
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  8. Article
  9. Prediction of Oral Cancer Biomarkers by Salivary Proteomics Data.International journal of molecular sciences · 2024
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. HOX Protein Activity Regulation by Cellular Localization.Journal of developmental biology · 2021
    Review
  19. Article
  20. Article

96 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

40 authors.

Bruno Aranda
Hagen Blankenburg
Samuel Kerrien
Fiona S L Brinkman
Arnaud Ceol
Emilie Chautard
Jose M Dana
Javier De Las Rivas
Marine Dumousseau
Eugenia Galeota
Anna Gaulton
Johannes Goll
Robert E W Hancock
Ruth Isserlin
Rafael C Jimenez
Jules Kerssemakers
Jyoti Khadake
David J Lynn
Magali Michaut
Gavin O'Kelly
Keiichiro Ono
Sandra Orchard
Carlos Prieto
Sabry Razick
Olga Rigina
Lukasz Salwinski
Milan Simonovic
Sameer Velankar
Andrew Winter
Guanming Wu
Gary D Bader
Gianni Cesareni
Ian M Donaldson
David Eisenberg
Gerard J Kleywegt
John Overington
Sylvie Ricard-Blum
Mike Tyers
Mario Albrecht
Henning Hermjakob

Funding

BioGRID: An open resource for biological interactions and network analysisR01OD010929 · OD · SINAI HEALTH SYSTEM · PI KARA DOLINSKI, Mike Tyers · 2012 to 2026
$13.9M
A Core Database of Interacting Proteins (DIP)R01GM071909 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI SALWINSKI, LUKASZ · 2006 to 2013
$4.0M
BioGRID: an open resource for biological interactions and network analysisR01RR024031 · NCRR · SINAI HEALTH SYSTEM · PI TYERS, MIKE · 2007 to 2011
$3.2M
NCRR NIH HHS R01 RR024031NIGMS NIH HHS R01 GM071909NIH HHS R01 OD010929Wellcome Trust 086151
6 · The paper itself

Abstract

PubMed holds no abstract for this paper.

Indexed as

SoftwareAnimalsComputational BiologyDatabases, FactualHumansProtein BindingProteinsProteins

Identifiers

PMID21716279
PMCPMC3246345

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.