Evidence map›Paper›PMID 21715477›Full record

ArticleJournal of virology2011

Reconstructing the history of maize streak virus strain a dispersal to reveal diversification hot spots and its origin in southern Africa.

Adérito L Monjane, Gordon W Harkins, Darren P Martin, Philippe Lemey, Pierre Lefeuvre, Dionne N Shepherd, Sunday Oluwafemi, Michelo Simuyandi, Innocent Zinga, Ephrem K Komba and 18 more

Abstract read
In one paragraph

Article in Journal of virology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors.

Adérito L MonjaneInstitute of Infectious Disease and Molecular Medicine, Faculty of Health Sciences, University of Cape Town, Private Bag X3, Rondebosch 7701, Cape Town, South Africa.
Gordon W Harkins
Darren P Martin
Philippe Lemey
Pierre Lefeuvre
Dionne N Shepherd
Sunday Oluwafemi
Michelo Simuyandi
Innocent Zinga
Ephrem K Komba
Didier P Lakoutene
Noella Mandakombo
Joseph Mboukoulida
Silla Semballa
Appolinaire Tagne
Fidèle Tiendrébéogo
Julia B Erdmann
Tania van Antwerpen
Betty E Owor
Bradley Flett
Moses Ramusi
Oliver P Windram
Rizwan Syed
Jean-Michel Lett
Rob W Briddon
Peter G Markham
Edward P Rybicki
Arvind Varsani

Funding

Wellcome Trust
6 · The paper itself

Abstract

Maize streak virus strain A (MSV-A), the causal agent of maize streak disease, is today one of the most serious biotic threats to African food security. Determining where MSV-A originated and how it spread transcontinentally could yield valuable insights into its historical emergence as a crop pathogen. Similarly, determining where the major extant MSV-A lineages arose could identify geographical hot spots of MSV evolution. Here, we use model-based phylogeographic analyses of 353 fully sequenced MSV-A isolates to reconstruct a plausible history of MSV-A movements over the past 150 years. We show that since the probable emergence of MSV-A in southern Africa around 1863, the virus spread transcontinentally at an average rate of 32.5 km/year (95% highest probability density interval, 15.6 to 51.6 km/year). Using distinctive patterns of nucleotide variation caused by 20 unique intra-MSV-A recombination events, we tentatively classified the MSV-A isolates into 24 easily discernible lineages. Despite many of these lineages displaying distinct geographical distributions, it is apparent that almost all have emerged within the past 4 decades from either southern or east-central Africa. Collectively, our results suggest that regular analysis of MSV-A genomes within these diversification hot spots could be used to monitor the emergence of future MSV-A lineages that could affect maize cultivation in Africa.

Indexed as

Evolution, MolecularPhylogeographyAfricaCluster AnalysisDNA, ViralMaize streak virusMolecular EpidemiologyMolecular Sequence DataPlant DiseasesSequence Analysis, DNAZea maysDNA, Viral

Identifiers

PMID21715477
PMCPMC3165777

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.