Evidence map›Paper›PMID 21714915›Full record

ArticleVirology journal2011

Real-world comparison of two molecular methods for detection of respiratory viruses.

S Asad Ali, James E Gern, Tina V Hartert, Kathryn M Edwards, Marie R Griffin, E Kathryn Miller, Tebeb Gebretsadik, Tressa Pappas, Wai-Ming Lee, John V Williams

Open access · goldAbstract readComparative StudyEvaluation Study
In one paragraph

Article in Virology journal, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. The Impact of RSV-Associated Respiratory Disease on Children in Asia.Journal of pediatric infectious diseases · 2019
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Detection of respiratory viruses in gargle specimens of healthy children.Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology · 2015
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. HexaPrime: a novel method for detection of coronaviruses.Journal of virological methods · 2013
    Article
  20. Burden of human metapneumovirus infection in young children.The New England journal of medicine · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

S Asad AliDepartment of Pediatrics, Vanderbilt University School of Medicine, 1161 21st Avenue South, Nashville, TN 37232, USA.
James E Gern
Tina V Hartert
Kathryn M Edwards
Marie R Griffin
E Kathryn Miller
Tebeb Gebretsadik
Tressa Pappas
Wai-Ming Lee
John V Williams
Vanderbilt University · USUniversity of Wisconsin–Madison · US

Funding

VANDERBILT UNIVERSITY CTSA FOR PEDIATRIC RESEARCHUL1RR024975 · NCRR · VANDERBILT UNIVERSITY · PI BERNARD, GORDON RAPHAEL · 2007 to 2011
$45.7M
Virus-Bacterial Interactions and Exacerba of AsthmaP01HL070831 · NHLBI · UNIVERSITY OF WISCONSIN-MADISON · PI GERN, JAMES E. · 2002 to 2017
$31.3M
RV-Mediated Mechanisms of Neutrophil Motility /InflammatU19AI070503 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI GERN, JAMES E. · 2006 to 2010
$6.8M
Host Determinants of Human Metapneumovirus Immunity and PathogenesisR01AI085062 · NIAID · VANDERBILT UNIVERSITY · PI John V. Williams · 2010 to 2026
$5.6M
Asthma Disparities in Cohorts at Risk for MorbidityU01HL072471 · NHLBI · VANDERBILT UNIVERSITY · PI SHELLER, JAMES R · 2002 to 2006
$2.9M
Midcareer Investigator Patient-oriented Research Award in Bronchiolitis & AsthmaK24AI077930 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI HARTERT, TINA V · 2008 to 2017
$1.6M
Attenuated Strains of Human Metapneumovirus for Vaccines and PathogenesisR21AI082417 · NIAID · VANDERBILT UNIVERSITY · PI WILLIAMS, JOHN V. · 2009 to 2010
$426k
NCRR NIH HHS UL1 RR024975NCRR NIH HHS UL1-RR024975NHLBI NIH HHS P01 HL070831NHLBI NIH HHS U01 HL-072471NHLBI NIH HHS U01 HL072471NIAID NIH HHS AI-077930NIAID NIH HHS AI-082417NIAID NIH HHS K24 AI077930NIAID NIH HHS R01 AI085062NIAID NIH HHS R21 AI082417NIAID NIH HHS U19 AI070503
6 · The paper itself

Abstract

backgroundMolecular polymerase chain reaction (PCR) based assays are increasingly used to diagnose viral respiratory infections and conduct epidemiology studies. Molecular assays have generally been evaluated by comparing them to conventional direct fluorescent antibody (DFA) or viral culture techniques, with few published direct comparisons between molecular methods or between institutions. We sought to perform a real-world comparison of two molecular respiratory viral diagnostic methods between two experienced respiratory virus research laboratories.

methodsWe tested nasal and throat swab specimens obtained from 225 infants with respiratory illness for 11 common respiratory viruses using both a multiplex assay (Respiratory MultiCode-PLx Assay [RMA]) and individual real-time RT-PCR (RT-rtPCR).

resultsBoth assays detected viruses in more than 70% of specimens, but there was discordance. The RMA assay detected significantly more human metapneumovirus (HMPV) and respiratory syncytial virus (RSV), while RT-rtPCR detected significantly more influenza A. We speculated that primer differences accounted for these discrepancies and redesigned the primers and probes for influenza A in the RMA assay, and for HMPV and RSV in the RT-rtPCR assay. The tests were then repeated and again compared. The new primers led to improved detection of HMPV and RSV by RT-rtPCR assay, but the RMA assay remained similar in terms of influenza detection.

conclusionsGiven the absence of a gold standard, clinical and research laboratories should regularly correlate the results of molecular assays with other PCR based assays, other laboratories, and with standard virologic methods to ensure consistency and accuracy.

Indexed as

Clinical Laboratory TechniquesFemaleHumansInfantMaleMolecular Diagnostic TechniquesNasal MucosaPharynxRespiratory Tract DiseasesVirologyVirus DiseasesViruses

Identifiers

PMID21714915
PMCPMC3154182
OpenAlexW2124242973

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.