ArticleFrontiers in neuroinformatics2011
The connectome viewer toolkit: an open source framework to manage, analyze, and visualize connectomes.
Article in Frontiers in neuroinformatics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
51 citing papers in PubMed.
- A Visual Interface for Exploring Hypotheses About Neural Circuits.IEEE transactions on visualization and computer graphics · 2024Article
- Modular community structure of the face network supports face recognition.Cerebral cortex (New York, N.Y. : 1991) · 2022Article
- Changes in the geometry and robustness of diffusion tensor imaging networks: Secondary analysis from a randomized controlled trial of young autistic children receiving an umbilical cord blood infusion.Frontiers in psychiatry · 2022Article
- Mapping individual differences across brain network structure to function and behavior with connectome embedding.NeuroImage · 2021Article
- Considering Sex as a Biological Variable in Basic and Clinical Studies: An Endocrine Society Scientific Statement.Endocrine reviews · 2021Article
- Good neighbors, bad neighbors: the frequent network neighborhood mapping of the hippocampus enlightens several structural factors of the human intelligence on a 414-subject cohort.Scientific reports · 2020Article
- The Frequent Network Neighborhood Mapping of the human hippocampus shows much more frequent neighbor sets in males than in females.PloS one · 2020Article
- The frequent complete subgraphs in the human connectome.PloS one · 2020Article
- [VisConnectome: an independent and graph-theory based software for visualizing the human brain connectome].Sheng wu yi xue gong cheng xue za zhi = Journal of biomedical engineering = Shengwu yixue gongchengxue zazhi · 2019Article
- Tinnitus distress: a paradoxical attention to the sound?Journal of neurology · 2019Article
- White Matter Tract Changes Associated with Clinical Improvement in an Open-Label Trial Assessing Autologous Umbilical Cord Blood for Treatment of Young Children with Autism.Stem cells translational medicine · 2019Article
- Comparing advanced graph-theoretical parameters of the connectomes of the lobes of the human brain.Cognitive neurodynamics · 2018Article
- Role of Dimensionality in Predicting the Spontaneous Behavior of the Brain Using the Classical Ising Model and the Ising Model Implemented on a Structural Connectome.Brain connectivity · 2018Article
- Structural connectome differences in HIV infection: brain network segregation associated with nadir CD4 cell count.Journal of neurovirology · 2018Article
- Structured networks support sparse traveling waves in rodent somatosensory cortex.Proceedings of the National Academy of Sciences of the United States of America · 2018Article
- Multimodal Neuroimaging Approach to Variability of Functional Connectivity in Disorders of Consciousness: A PET/MRI Pilot Study.Frontiers in neurology · 2018Article
- Data-driven visualization of multichannel EEG coherence networks based on community structure analysis.Applied network science · 2018Article
- NeuroCave: A web-based immersive visualization platform for exploring connectome datasets.Network neuroscience (Cambridge, Mass.) · 2018Article
- The Robustness and the Doubly-Preferential Attachment Simulation of the Consensus Connectome Dynamics of the Human Brain.Scientific reports · 2017Article
- A method for independent component graph analysis of resting-state fMRI.Brain and behavior · 2017Article
Corrections and comments
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Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Advanced neuroinformatics tools are required for methods of connectome mapping, analysis, and visualization. The inherent multi-modality of connectome datasets poses new challenges for data organization, integration, and sharing. We have designed and implemented the Connectome Viewer Toolkit - a set of free and extensible open source neuroimaging tools written in Python. The key components of the toolkit are as follows: (1) The Connectome File Format is an XML-based container format to standardize multi-modal data integration and structured metadata annotation. (2) The Connectome File Format Library enables management and sharing of connectome files. (3) The Connectome Viewer is an integrated research and development environment for visualization and analysis of multi-modal connectome data. The Connectome Viewer's plugin architecture supports extensions with network analysis packages and an interactive scripting shell, to enable easy development and community contributions. Integration with tools from the scientific Python community allows the leveraging of numerous existing libraries for powerful connectome data mining, exploration, and comparison. We demonstrate the applicability of the Connectome Viewer Toolkit using Diffusion MRI datasets processed by the Connectome Mapper. The Connectome Viewer Toolkit is available from http://www.cmtk.org/
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.