Evidence map›Paper›PMID 21712824›Full record

ArticleBritish journal of cancer2011

Methylator phenotype of malignant germ cell tumours in children identifies strong candidates for chemotherapy resistance.

J N Jeyapalan, D A Mohamed Noor, S-H Lee, C L Tan, V A Appleby, J P Kilday, R D Palmer, E C Schwalbe, S C Clifford, D A Walker and 4 more

Open access · hybridAbstract read
In one paragraph

Article in British journal of cancer, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.7field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 31 citations in OpenAlex.

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  7. Pediatric mediastinal germ cell tumors.Mediastinum (Hong Kong, China) · 2019
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 7 institutions in 1 country.

J N JeyapalanChildren's Brain Tumour Research Centre, Centre for Genetics and Genomics, University of Nottingham, Queen's Medical Centre, Nottingham NG7 2UH, UK.
D A Mohamed Noor
S-H Lee
C L Tan
V A Appleby
J P Kilday
R D Palmer
E C Schwalbe
S C Clifford
D A Walker
M J Murray
N Coleman
J C Nicholson
P J Scotting
University of Nottingham · GBBrain Tumour Research · GBHutchison/MRC Research Centre · GBNewcastle University · GBQueen's Medical Centre · GBAddenbrooke's Hospital · GBMRC Cancer Unit · GB

Funding

Medical Research Council MC_U105359875
6 · The paper itself

Abstract

backgroundYolk sac tumours (YSTs) and germinomas are the two major pure histological subtypes of germ cell tumours. To date, the role of DNA methylation in the aetiology of this class of tumour has only been analysed in adult testicular forms and with respect to only a few genes.

methodsA bank of paediatric tumours was analysed for global methylation of LINE-1 repeat elements and global methylation of regulatory elements using GoldenGate methylation arrays.

resultsBoth germinomas and YSTs exhibited significant global hypomethylation of LINE-1 elements. However, in germinomas, methylation of gene regulatory regions differed little from control samples, whereas YSTs exhibited increased methylation at a large proportion of the loci tested, showing a 'methylator' phenotype, including silencing of genes associated with Caspase-8-dependent apoptosis. Furthermore, we found that the methylator phenotype of YSTs was coincident with higher levels of expression of the DNA methyltransferase, DNA (cytosine-5)-methyltransferase 3B, suggesting a mechanism underlying the phenotype.

conclusionEpigenetic silencing of a large number of potential tumour suppressor genes in YSTs might explain why they exhibit a more aggressive natural history than germinomas and silencing of genes associated with Caspase-8-dependent cell death might explain the relative resistance of YSTs to conventional therapy.

Indexed as

DNA MethylationGene SilencingGenes, Tumor SuppressorApoptosisCaspase 8ChildChild, PreschoolCluster AnalysisDNA (Cytosine-5-)-MethyltransferasesDNA Methyltransferase 3BDrug Resistance, NeoplasmEndodermal Sinus TumorFemaleGene Expression Regulation, EnzymologicGene Expression Regulation, NeoplasticGerminomaCaspase 8DNA (Cytosine-5-)-MethyltransferasesDNA Methyltransferase 3B

Identifiers

PMID21712824
PMCPMC3170957
OpenAlexW2074405599

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.