Evidence map›Paper›PMID 21712380›Full record

ArticleThe Journal of biological chemistry2011

An Atg13 protein-mediated self-association of the Atg1 protein kinase is important for the induction of autophagy.

Yuh-Ying Yeh, Khyati H Shah, Paul K Herman

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
3.6field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 56 citations in OpenAlex.

  1. Article
  2. The Role of Sigmar1 in Autophagy Regulation and Disease Therapy.International journal of molecular sciences · 2026
    Review
  3. The autophagy-specific exocyst subcomplex contributes to phagophore assembly site integrity by promoting phagophore expansion.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  4. Article
  5. Article
  6. The human autophagy-initiating complexes ULK1C and PI3KC3-C1.The Journal of biological chemistry · 2025
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Autophagy plays an essential role in bone homeostasis.Journal of cellular physiology · 2019
    Review
  17. PP2C phosphatases promote autophagy by dephosphorylation of the Atg1 complex.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Yuh-Ying YehDepartment of Molecular Genetics, The Ohio State University, Columbus Ohio 43210; Program in Molecular, Cellular, and Developmental Biology, The Ohio State University, Columbus Ohio 43210.
Khyati H ShahDepartment of Molecular Genetics, The Ohio State University, Columbus Ohio 43210; Ohio State Biochemistry Program, The Ohio State University, Columbus Ohio 43210.
Paul K HermanDepartment of Molecular Genetics, The Ohio State University, Columbus Ohio 43210; Program in Molecular, Cellular, and Developmental Biology, The Ohio State University, Columbus Ohio 43210; Ohio State Biochemistry Program, The Ohio State University, Columbus Ohio 43210. Electronic address: herman.81@osu.edu.
The Ohio State University · US

Funding

The regulation of autophagy pathways in eukaryotic cellsR01GM065227 · NIGMS · OHIO STATE UNIVERSITY · PI HERMAN, PAUL K · 2002 to 2014
$3.6M
NIGMS NIH HHS GM65227NIGMS NIH HHS R01 GM065227
6 · The paper itself

Abstract

Autophagy pathways in eukaryotic cells mediate the turnover of a diverse set of cytoplasmic components, including damaged organelles and abnormal protein aggregates. Autophagy-mediated degradation is highly regulated, and defects in these pathways have been linked to a number of human disorders. The Atg1 protein kinase appears to be a key site of this control and is targeted by multiple signaling pathways to ensure the appropriate autophagic response to changing environmental conditions. Despite the importance of this kinase, relatively little is known about the molecular details of Atg1 activation. In this study we show that Atg13, an evolutionarily conserved regulator of Atg1, promotes the formation of a specific Atg1 self-interaction in the budding yeast, Saccharomyces cerevisiae. The appearance of this Atg1-Atg1 complex is correlated with the induction of autophagy, and conditions that disrupt this complex result in diminished levels of both autophagy and Atg1 kinase activity. Moreover, the addition of a heterologous dimerization domain to Atg1 resulted in elevated kinase activity both in vivo and in vitro. The formation of this complex appears to be an important prerequisite for the subsequent autophosphorylation of Thr-226 in the Atg1 activation loop. Previous work indicates that this modification is necessary and perhaps sufficient for Atg1 kinase activity. Interestingly, this Atg1 self-association does not require Atg17, suggesting that this second conserved regulator might activate Atg1 in a manner mechanistically distinct from that of Atg13. In all, this work suggests a model whereby this self-association stimulates the autophosphorylation of Atg1 within its activation loop.

Indexed as

Models, BiologicalAdaptor Proteins, Signal TransducingAutophagyAutophagy-Related ProteinsHumansMultiprotein ComplexesPhosphorylationProtein BindingProtein KinasesProtein Structure, SecondaryProtein Structure, TertiarySaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAdaptor Proteins, Signal TransducingATG13 protein, S cerevisiaeATG1 protein, S cerevisiaeAutophagy-Related ProteinsMultiprotein ComplexesProtein KinasesSaccharomyces cerevisiae Proteins

Identifiers

PMID21712380
PMCPMC3190700
OpenAlexW1985600706

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.