ArticleBioinformatics (Oxford, England)2011
Integration and visualization of host-pathogen data related to infectious diseases.
Article in Bioinformatics (Oxford, England), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
12 citing papers in PubMed, 1 synthesis or guideline pooled it, 20 citations in OpenAlex.
- Visualization and analytics tools for infectious disease epidemiology: a systematic review.Journal of biomedical informatics · 2014Pooled it
- Cell-to-Cell and Patient-to-Patient Variability in Antimicrobial Resistance.Microorganisms · 2025Review
- Suppressive Effects ofBiomedicines · 2023Article
- Metagenomic Analysis Reveals A Possible Association Between Respiratory Infection and Periodontitis.Genomics, proteomics & bioinformatics · 2022Article
- One Health Approaches to TraceFrontiers in microbiology · 2021Review
- Heat map visualization for electrocardiogram data analysis.BMC cardiovascular disorders · 2020Article
- Recovery of gut microbiota of healthy adults following antibiotic exposure.Nature microbiology · 2018Article
- Article
- Curation, integration and visualization of bacterial virulence factors in PATRIC.Bioinformatics (Oxford, England) · 2015Article
- PATRIC, the bacterial bioinformatics database and analysis resource.Nucleic acids research · 2014Article
- Database resources for the tuberculosis community.Tuberculosis (Edinburgh, Scotland) · 2013Review
- Phylogeography of swine influenza H3N2 in the United States: translational public health for zoonotic disease surveillance.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2013Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
9 authors at 2 institutions in 1 country.
Funding
Abstract
motivationInfectious disease research is generating an increasing amount of disparate data on pathogenic systems. There is a growing need for resources that effectively integrate, analyze, deliver and visualize these data, both to improve our understanding of infectious diseases and to facilitate the development of strategies for disease control and prevention.
resultsWe have developed Disease View, an online host-pathogen resource that enables infectious disease-centric access, analysis and visualization of host-pathogen interactions. In this resource, we associate infectious diseases with corresponding pathogens, provide information on pathogens, pathogen virulence genes and the genetic and chemical evidences for the human genes that are associated with the diseases. We also deliver the relationships between pathogens, genes and diseases in an interactive graph and provide the geolocation reports of associated diseases around the globe in real time. Unlike many other resources, we have applied an iterative, user-centered design process to the entire resource development, including data acquisition, analysis and visualization. AVAILABILITY AND IMPLEMENTATION: Freely available at http://www.patricbrc.org; all major web browsers supported. CONTACT: cmao@vbi.vt.edu SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.