Evidence map›Paper›PMID 21710971›Full record

ArticleBiochemistry2011

Pa0148 from Pseudomonas aeruginosa catalyzes the deamination of adenine.

Alissa M Goble, Zhening Zhang, J Michael Sauder, Stephen K Burley, Subramanyam Swaminathan, Frank M Raushel

Abstract read
In one paragraph

Article in Biochemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Anti-Inflammatory Metabolites in the Pathogenesis of Bacterial Infection.Frontiers in cellular and infection microbiology · 2022
    Review
  3. Biochemical Characterization ofFrontiers in bioengineering and biotechnology · 2018
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Discovery of a cytokinin deaminase.ACS chemical biology · 2011
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Alissa M GobleDepartment of Chemistry, P.O. Box 30012, Texas A&M University , College Station, Texas 77843-3012, United States.
Zhening Zhang
J Michael Sauder
Stephen K Burley
Subramanyam Swaminathan
Frank M Raushel
Brookhaven National Laboratory · USCenter Point · USBiotechnology Institute · USTexas A&M University · US

Funding

SUBPROJECT 5U54GM074945 · NIGMS · SGX PHARMACEUTICALS, INC. · PI BURLEY, STEPHEN KEVIN · 2005 to 2009
$46.2M
Theoretical and Computational ApproachesP01GM071790 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI RAUSHEL, FRANK M. · 2004 to 2013
$15.5M
NIGMS NIH HHS GM 71790NIGMS NIH HHS GM 74945NIGMS NIH HHS P01 GM071790NIGMS NIH HHS U54 GM074945
6 · The paper itself

Abstract

Four proteins from NCBI cog1816, previously annotated as adenosine deaminases, have been subjected to structural and functional characterization. Pa0148 (Pseudomonas aeruginosa PAO1), AAur1117 (Arthrobacter aurescens TC1), Sgx9403e, and Sgx9403g have been purified and their substrate profiles determined. Adenosine is not a substrate for any of these enzymes. All of these proteins will deaminate adenine to produce hypoxanthine with k(cat)/K(m) values that exceed 10(5) M(-1) s(-1). These enzymes will also accept 6-chloropurine, 6-methoxypurine, N-6-methyladenine, and 2,6-diaminopurine as alternate substrates. X-ray structures of Pa0148 and AAur1117 have been determined and reveal nearly identical distorted (β/α)(8) barrels with a single zinc ion that is characteristic of members of the amidohydrolase superfamily. Structures of Pa0148 with adenine, 6-chloropurine, and hypoxanthine were also determined, thereby permitting identification of the residues responsible for coordinating the substrate and product.

Indexed as

Adenosine DeaminaseAmidohydrolasesArthrobacterBacterial ProteinsCatalysisCatalytic DomainCrystallography, X-RayDeaminationLigandsProtein Structure, SecondaryPseudomonas aeruginosaStructural Homology, ProteinStructure-Activity RelationshipSubstrate SpecificityZincAdenosine DeaminaseAmidohydrolasesBacterial ProteinsLigandsZinc

Identifiers

PMID21710971
PMCPMC3151671
OpenAlexW2076168781

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.