Evidence map›Paper›PMID 21706014›Full record

ArticleNature methods2011

A public genome-scale lentiviral expression library of human ORFs.

Xiaoping Yang, Jesse S Boehm, Xinping Yang, Kourosh Salehi-Ashtiani, Tong Hao, Yun Shen, Rakela Lubonja, Sapana R Thomas, Ozan Alkan, Tashfeen Bhimdi and 14 more

Abstract read
In one paragraph

Article in Nature methods, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 381 papers.

0numbers the graph read from it
0cells of the map it votes in
381citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

381 citing papers in PubMed.

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  20. The human endogenous retroviral envelope HEMO protein interacts with BACE2: Novel partnership acquired in the primate lineage.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article

321 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors.

Xiaoping YangRNA interference (RNAi) Platform, Broad Institute of Harvard and Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.
Jesse S Boehm
Xinping Yang
Kourosh Salehi-Ashtiani
Tong Hao
Yun Shen
Rakela Lubonja
Sapana R Thomas
Ozan Alkan
Tashfeen Bhimdi
Thomas M Green
Cory M Johannessen
Serena J Silver
Cindy Nguyen
Ryan R Murray
Haley Hieronymus
Dawit Balcha
Changyu Fan
Chenwei Lin
Lila Ghamsari
Marc Vidal
William C Hahn
David E Hill
David E Root

Funding

Therapeutic Opportunities for Pediatric AstrocytomaP01CA142536 · NCI · DANA-FARBER CANCER INST · PI LIGON, KEITH LLOYD · 2011 to 2015
$7.9M
Integrated genomic approaches to identify and validate cancer targetsR33CA128625 · NCI · DANA-FARBER CANCER INST · PI HAHN, WILLIAM C. · 2008 to 2010
$1.6M
NCI NIH HHS P01 CA142536NCI NIH HHS R33 CA128625
6 · The paper itself

Abstract

Functional characterization of the human genome requires tools for systematically modulating gene expression in both loss-of-function and gain-of-function experiments. We describe the production of a sequence-confirmed, clonal collection of over 16,100 human open-reading frames (ORFs) encoded in a versatile Gateway vector system. Using this ORFeome resource, we created a genome-scale expression collection in a lentiviral vector, thereby enabling both targeted experiments and high-throughput screens in diverse cell types.

Indexed as

Genomic LibraryCloning, MolecularGenetic VectorsHumansLentivirusOpen Reading Frames

Identifiers

PMID21706014
PMCPMC3234135

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.