Evidence map›Paper›PMID 21705754›Full record

ArticleGenetics2011

Ectopic gene expression and organogenesis in Arabidopsis mutants missing BRU1 required for genome maintenance.

Yusuke Ohno, Jarunya Narangajavana, Akiko Yamamoto, Tsukaho Hattori, Yasuaki Kagaya, Jerzy Paszkowski, Wilhelm Gruissem, Lars Hennig, Shin Takeda

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. eLife · 2016
    Article
  6. Review
  7. Article
  8. Epigenetic regulation in plants.Cold Spring Harbor perspectives in biology · 2014
    Review
  9. Article
  10. GIP/MZT1 proteins orchestrate nuclear shaping.Frontiers in plant science · 2014
    Review
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 4 countries.

Yusuke OhnoBioscience and Biotechnology Center, Nagoya University, Chikusa, Nagoya 464-8601, Japan.
Jarunya Narangajavana
Akiko Yamamoto
Tsukaho Hattori
Yasuaki Kagaya
Jerzy Paszkowski
Wilhelm Gruissem
Lars Hennig
Shin Takeda
Nagoya University · JPETH Zurich · CHMie University · JPSwedish University of Agricultural Sciences · SEUniversity of Geneva · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chromatin reconstitution after DNA replication and repair is essential for the inheritance of epigenetic information, but mechanisms underlying such a process are still poorly understood. Previously, we proposed that Arabidopsis BRU1 functions to ensure the chromatin reconstitution. Loss-of-function mutants of BRU1 are hypersensitive to genotoxic stresses and cause release of transcriptional gene silencing of heterochromatic genes. In this study, we show that BRU1 also plays roles in gene regulation in euchromatic regions. bru1 mutations caused sporadic ectopic expression of genes, including those that encode master regulators of developmental programs such as stem cell maintenance and embryogenesis. bru1 mutants exhibited adventitious organogenesis, probably due to the misexpression of such developmental regulators. The key regulatory genes misregulated in bru1 alleles were often targets of PcG SET-domain proteins, although the overlap between the bru1-misregulated and PcG SET-domain-regulated genes was limited at a genome-wide level. Surprisingly, a considerable fraction of the genes activated in bru1 were located in several subchromosomal regions ranging from 174 to 944 kb in size. Our results suggest that BRU1 has a function related to the stability of subchromosomal gene regulation in the euchromatic regions, in addition to the maintenance of chromatin states coupled with heritable epigenetic marks.

Indexed as

Gene Expression Regulation, PlantGenome, PlantArabidopsisArabidopsis ProteinsCell NucleusChromosomal Proteins, Non-HistoneChromosome MappingChromosomes, PlantGene Expression ProfilingGene Expression Regulation, DevelopmentalMutationOrganogenesisPolycomb-Group ProteinsRepressor ProteinsTranscription FactorsArabidopsis ProteinsAT3G18730 protein, ArabidopsisChromosomal Proteins, Non-HistoneFUSCA3 protein, ArabidopsisPolycomb-Group ProteinsRepressor ProteinsTranscription Factors

Identifiers

PMID21705754
PMCPMC3176131
OpenAlexW2161355502

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.