Evidence map›Paper›PMID 21705661›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2011

Five phosphonate operon gene products as components of a multi-subunit complex of the carbon-phosphorus lyase pathway.

Bjarne Jochimsen, Signe Lolle, Fern R McSorley, Mariah Nabi, Jens Stougaard, David L Zechel, Bjarne Hove-Jensen

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 80 citations in OpenAlex.

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  15. Inducible T7 RNA Polymerase-mediated Multigene Expression System, pMGX.Journal of visualized experiments : JoVE · 2017
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Bjarne JochimsenDepartment of Molecular Biology, Aarhus University, 10 Gustav Wieds Vej, DK-8000 Aarhus, Denmark.
Signe Lolle
Fern R McSorley
Mariah Nabi
Jens Stougaard
David L Zechel
Bjarne Hove-Jensen
Queen's University · CAAarhus University · DKUniversity of Copenhagen · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Organophosphonate utilization by Escherichia coli requires the 14 cistrons of the phnCDEFGHIJKLMNOP operon, of which the carbon-phosphorus lyase has been postulated to consist of the seven polypeptides specified by phnG to phnM. A 5,660-bp DNA fragment encompassing phnGHIJKLM is cloned, followed by expression in E. coli and purification of Phn-polypeptides. PhnG, PhnH, PhnI, PhnJ, and PhnK copurify as a protein complex by ion-exchange, size-exclusion, and affinity chromatography. The five polypeptides also comigrate in native-PAGE. Cross-linking of the purified protein complex reveals a close proximity of PhnG, PhnI, PhnJ, and PhnK, as these subunits disappear concomitant with the formation of large cross-linked protein complexes. Two molecular forms are identified, a major form of molecular mass of approximately 260 kDa, a minor form of approximately 640 kDa. The stoichiometry of the protein complex is suggested to be PhnG(4)H(2)I(2)J(2)K. Deletion of individual phn genes reveals that a strain harboring plasmid-borne phnGHIJ produces a protein complex consisting of PhnG, PhnH, PhnI, and PhnJ, whereas a strain harboring plasmid-borne phnGIJK produces a protein complex consisting of PhnG and PhnI. We conclude that phnGHIJK specify a soluble multisubunit protein complex essential for organophosphonate utilization.

Indexed as

Base SequenceCloning, MolecularDNA, BacterialEscherichia coliGenesGenes, BacterialLyasesMetabolic Networks and PathwaysModels, BiologicalMolecular WeightMultienzyme ComplexesOperonOrganophosphonatesProtein SubunitsRegulonSequence Deletioncarbon-phosphorus lyaseDNA, BacterialLyasesMultienzyme ComplexesOrganophosphonatesProtein Subunits

Identifiers

PMID21705661
PMCPMC3136323
OpenAlexW2040538549

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.