Evidence map›Paper›PMID 21705586›Full record

ArticleJournal of bacteriology2011

Genome sequences of the biotechnologically important Bacillus megaterium strains QM B1551 and DSM319.

Mark Eppinger, Boyke Bunk, Mitrick A Johns, Janaka N Edirisinghe, Kirthi K Kutumbaka, Sara S K Koenig, Heather Huot Creasy, M J Rosovitz, David R Riley, Sean Daugherty and 15 more

Abstract read
In one paragraph

Article in Journal of bacteriology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 71 papers.

0numbers the graph read from it
0cells of the map it votes in
71citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

71 citing papers in PubMed.

  1. Article
  2. International journal of molecular sciences · 2026
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  6. Pathogens (Basel, Switzerland) · 2025
    Review
  7. Article
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  9. Analysis of the genome ofData in brief · 2024
    Article
  10. Article
  11. Interaction ofMicroorganisms · 2024
    Review
  12. Draft genome sequence ofMicrobiology resource announcements · 2024
    Article
  13. Mechanism of Salt Tolerance and Plant Growth Promotion inInternational journal of molecular sciences · 2023
    Article
  14. Complete and Draft Genome Sequences of 52Microbiology resource announcements · 2023
    Article
  15. Article
  16. Article
  17. Role of RhizosphericFrontiers in plant science · 2022
    Article
  18. Review
  19. Review
  20. Article

11 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors.

Mark EppingerInstitute for Genomic Sciences and Department of Microbiology and Immunology, University of Maryland, School of Medicine, Baltimore, MD 21201, USA.
Boyke Bunk
Mitrick A Johns
Janaka N Edirisinghe
Kirthi K Kutumbaka
Sara S K Koenig
Heather Huot Creasy
M J Rosovitz
David R Riley
Sean Daugherty
Madeleine Martin
Liam D H Elbourne
Ian Paulsen
Rebekka Biedendieck
Christopher Braun
Scott Grayburn
Sourabh Dhingra
Vitaliy Lukyanchuk
Barbara Ball
Riaz Ul-Qamar
Jürgen Seibel
Erhard Bremer
Dieter Jahn
Jacques Ravel
Patricia S Vary

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacillus megaterium is deep-rooted in the Bacillus phylogeny, making it an evolutionarily key species and of particular importance in understanding genome evolution, dynamics, and plasticity in the bacilli. B. megaterium is a commercially available, nonpathogenic host for the biotechnological production of several substances, including vitamin B(12), penicillin acylase, and amylases. Here, we report the analysis of the first complete genome sequences of two important B. megaterium strains, the plasmidless strain DSM319 and QM B1551, which harbors seven indigenous plasmids. The 5.1-Mbp chromosome carries approximately 5,300 genes, while QM B1551 plasmids represent a combined 417 kb and 523 genes, one of the largest plasmid arrays sequenced in a single bacterial strain. We have documented extensive gene transfer between the plasmids and the chromosome. Each strain carries roughly 300 strain-specific chromosomal genes that account for differences in their experimentally confirmed phenotypes. B. megaterium is able to synthesize vitamin B(12) through an oxygen-independent adenosylcobalamin pathway, which together with other key energetic and metabolic pathways has now been fully reconstructed. Other novel genes include a second ftsZ gene, which may be responsible for the large cell size of members of this species, as well as genes for gas vesicles, a second β-galactosidase gene, and most but not all of the genes needed for genetic competence. Comprehensive analyses of the global Bacillus gene pool showed that only an asymmetric region around the origin of replication was syntenic across the genus. This appears to be a characteristic feature of the Bacillus spp. genome architecture and may be key to their sporulating lifestyle.

Indexed as

Genome, BacterialBacillus megateriumChromosomes, BacterialFlagellaGene Expression Regulation, BacterialGenetic VariationMolecular Sequence DataPhylogenyPlasmidsSpecies Specificity

Identifiers

PMID21705586
PMCPMC3147683

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.