Evidence map›Paper›PMID 21705545›Full record

ArticleApplied and environmental microbiology2011

Biochemical and mutational studies of the Bacillus cereus CECT 5050T formamidase support the existence of a C-E-E-K tetrad in several members of the nitrilase superfamily.

Pablo Soriano-Maldonado, Ana Isabel Martínez-Gómez, Montserrat Andújar-Sánchez, José L Neira, Josefa María Clemente-Jiménez, Francisco Javier Las Heras-Vázquez, Felipe Rodríguez-Vico, Sergio Martínez-Rodríguez

Open access · greenAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Pablo Soriano-MaldonadoDepartamento de Química Física, Bioquímica y Química Inorgánica, Universidad de Almería, Almería, Spain.
Ana Isabel Martínez-Gómez
Montserrat Andújar-Sánchez
José L Neira
Josefa María Clemente-Jiménez
Francisco Javier Las Heras-Vázquez
Felipe Rodríguez-Vico
Sergio Martínez-Rodríguez
University of Almería · ESUniversitat de Miguel Hernández d'Elx · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Formamidases (EC 3.5.1.49) are poorly characterized proteins. In spite of this scarce knowledge, ammonia has been described as playing a central role in the pathogenesis of human pathogens such as Helicobacter pylori, for which formamidase has been shown to participate in the nitrogen metabolic pathway. Sequence analysis has revealed that at least two different groups of formamidases are classified as EC 3.5.1.49: on the one hand, the derivatives of the FmdA-AmdA superfamily, which are the best studied to date, and on the other hand, the derivatives of Helicobacter pylori AmiF. Here we present the cloning, purification, and characterization of a recombinant formamidase from Bacillus cereus CECT 5050T (BceAmiF), the second member of the AmiF subfamily to be characterized, showing new features of the enzyme further supporting its relationship with aliphatic amidases. We also present homology modeling-based mutational studies confirming the importance of the Glu140 and Tyr191 residues in the enzymatic activities of the AmiF family. Moreover, we can conclude that a second glutamate residue is critical in several members of the nitrilase superfamily, meaning that what has consistently been identified as a C-E-K triad is in fact a C-E-E-K tetrad.

Indexed as

AmidohydrolasesAminohydrolasesBacillus cereusBacterial ProteinsBase SequenceCatalysisChromatography, GelChromatography, High Pressure LiquidCircular DichroismCloning, MolecularEnzyme ActivationEnzyme AssaysEscherichia coliGlutamic AcidMolecular Sequence DataMutagenesis, Site-DirectedAmidohydrolasesAminohydrolasesBacterial ProteinsformamidaseGlutamic AcidnitrilaseRecombinant Proteins

Identifiers

PMID21705545
PMCPMC3165270
OpenAlexW2168301253

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.