Evidence map›Paper›PMID 21702495›Full record

ArticleAnalytical chemistry2011

DNA sensing by amplifying the number of near-infrared emitting, oligonucleotide-encapsulated silver clusters.

Jeffrey T Petty, Bidisha Sengupta, Sandra P Story, Natalya N Degtyareva

Abstract read
In one paragraph

Article in Analytical chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. DNA-Directed Fluorescence Switching of Silver Clusters.The journal of physical chemistry. C, Nanomaterials and interfaces · 2015
    Article
  11. Article
  12. Article
  13. Article
  14. A silver cluster-DNA equilibrium.Analytical chemistry · 2013
    Article
  15. Review
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Jeffrey T PettyDepartment of Chemistry, Furman University, Greenville, South Carolina 29613, United States. jeff.petty@furman.edu
Bidisha Sengupta
Sandra P Story
Natalya N Degtyareva

Funding

Supplement for South Carolina BRIN - 1P20 RR16461P20RR016461 · NCRR · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI DEAVOR, JAMES · 2001 to 2011
$32.3M
The Effect of Water on Sequence Specific DNA RecognitionR15GM071370 · NIGMS · FURMAN UNIVERSITY · PI PETTY, JEFFREY T · 2004 to 2004
$215k
DNA-Silver Cluster Complexes for Fluorescent DiagnosticsR15GM084442 · NIGMS · FURMAN UNIVERSITY · PI PETTY, JEFFREY THOMAS · 2008 to 2008
$215k
NCRR NIH HHS P20 RR-016461NCRR NIH HHS P20 RR016461NIGMS NIH HHS R15 GM071370NIGMS NIH HHS R15GM071370NIGMS NIH HHS R15 GM084442
6 · The paper itself

Abstract

A bifunctional oligonucleotide integrates in situ synthesis of a fluorogenic silver cluster with recognition of a target DNA sequence. With the template C(3)AC(3)AC(3)GC(3)A, a complex forms with 10 silver atoms that possesses electronic transitions in the near-infrared and that is detected at nanomolar concentrations using diode laser excitation. Pendant to this cluster encoding region, the recognition component binds a target DNA strand through hybridization, and decoupling of these two regions of the composite sensor renders a modular sensor for specific oligonucleotides. A target is detected using a quencher strand that bridges the cluster template and recognition components and disturbs cluster binding, as indicated by static quenching. Competitive displacement of the quencher by the target strand restores the favored cluster environment, and our key finding is that this exchange enhances emission through a proportional increase in the number of emissive clusters. DNA detection is also accomplished in serum-containing buffers by taking advantage of the high brightness of this fluorophore and the inherently low endogenous background in the near-infrared spectral region. Cluster stability in this biological environment is enhanced by supplementing the solutions with Ag(+).

Indexed as

Base SequenceDNAFluorescent DyesNucleic Acid HybridizationOligonucleotidesSilverSpectroscopy, Near-InfraredDNAFluorescent DyesOligonucleotidesSilver

Identifiers

PMID21702495
PMCPMC4201625

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.