Evidence map›Paper›PMID 21700777›Full record

ArticleCarcinogenesis2011

Genetic polymorphisms of multiple DNA repair pathways impact age at diagnosis and TP53 mutations in breast cancer.

Tasha R Smith, Wen Liu-Mares, Beth O Van Emburgh, Edward A Levine, Glenn O Allen, Jeff W Hill, Isildinha M Reis, Laura A Kresty, Mark D Pegram, Mark S Miller and 1 more

Abstract read
In one paragraph

Article in Carcinogenesis, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 3 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 3 syntheses or guidelines pooled it.

  1. MSH3 rs26279 polymorphism increases cancer risk: a meta-analysis.International journal of clinical and experimental pathology · 2015
    Pooled it
  2. Pooled it
  3. Pooled it
  4. Association ofmedRxiv : the preprint server for health sciences · 2023
    Article
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  6. Article
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  10. Novel Implications in Molecular Diagnosis of Lynch Syndrome.Gastroenterology research and practice · 2017
    Review
  11. Article
  12. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Tasha R SmithSylvester Comprehensive Cancer Center, University of Miami Leonard Miller School of Medicine, Miami, FL 33136, USA.
Wen Liu-Mares
Beth O Van Emburgh
Edward A Levine
Glenn O Allen
Jeff W Hill
Isildinha M Reis
Laura A Kresty
Mark D Pegram
Mark S Miller
Jennifer J Hu

Funding

Tumor Tissue CoreP30CA012197 · NCI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI Ruben A. Mesa · 1985 to 2026
$55.4M
Training Program in Cancer BiologyT32CA079448 · NCI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI KRIDEL, STEVEN J. · 2000 to 2014
$6.5M
Mayo Cancer Genetic Epidemiology Training ProgramR25CA092049 · NCI · MAYO CLINIC ROCHESTER · PI PETERSEN, GLORIA M., VACHON, CELINE M · 2001 to 2018
$5.3M
METABOLIC GENOTYPES &ONCOGENIC DAMAGE IN BREAST CANCERR01CA081330 · NCI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI MILLER, MARK STEVEN · 2000 to 2004
$1.5M
Molecular Epidemiology and Prevention of Breast CancerR01CA073629 · NCI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI HU, JENNIFER J. · 2003 to 2007
$1.3M
NCI NIH HHS P30 CA012197NCI NIH HHS P30 CA12197NCI NIH HHS R01 CA073629NCI NIH HHS R01 CA081330NCI NIH HHS R01 CA73629NCI NIH HHS R01 CA81330NCI NIH HHS R25 CA092049NCI NIH HHS T32 CA079448NCI NIH HHS T32 CA79448
6 · The paper itself

Abstract

Defective DNA repair may contribute to early age and late stage at time of diagnosis and mutations in critical tumor suppressor genes, such as TP53 in breast cancer. Using DNA samples from 436 breast cancer cases (374 Caucasians and 62 African-Americans), we tested these associations with 18 non-synonymous single-nucleotide polymorphisms (nsSNPs) in four DNA repair pathways: (i) base excision repair: ADPRT V762A, APE1 D148E, XRCC1 R194W/R280H/R399Q and POLD1 R119H; (ii) double-strand break repair: NBS1 E185Q and XRCC3 T241M; (iii) mismatch repair: MLH1 I219V, MSH3 R940Q/T1036A and MSH6 G39E and (iv) nucleotide excision repair: ERCC2 D312N/K751Q, ERCC4 R415Q, ERCC5 D1104H and XPC A499V/K939Q. Younger age at diagnosis (<50) was associated with ERCC2 312 DN/NN genotypes [odds ratio (OR) = 1.76; 95% confidence interval (CI) = 1.10, 2.81] and NBS1 185 QQ genotype (OR = 3.09; 95% CI = 1.47, 6.49). The XPC 939 QQ genotype was associated with TP53 mutations (OR = 5.80; 95% CI = 2.23, 15.09). There was a significant trend associating younger age at diagnosis (<50) with increasing numbers of risk genotypes for ERCC2 312 DN/NN, MSH6 39 EE and NBS1 185 QQ (P(trend) < 0.001). A similar significant trend was also observed associating TP53 mutations with increasing numbers of risk genotypes for XRCC1 399 QQ, XPC 939 QQ, ERCC4 415 QQ and XPC 499 AA (P(trend) < 0.001). Our pilot data suggest that nsSNPs of multiple DNA repair pathways are associated with younger age at diagnosis and TP53 mutations in breast cancer and larger studies are warranted to further evaluate these associations.

Indexed as

DNA RepairGenes, p53MutationPolymorphism, GeneticAdultAgedAge FactorsBody Mass IndexBreast NeoplasmsCell Cycle ProteinsDNA-Binding ProteinsFemaleHumansMiddle AgedNeoplasm StagingNuclear ProteinsCell Cycle ProteinsDNA-Binding ProteinsNBN protein, humanNuclear ProteinsX-ray Repair Cross Complementing Protein 1X-ray repair cross complementing protein 3XRCC1 protein, human

Identifiers

PMID21700777
PMCPMC3165125

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.