Evidence map›Paper›PMID 21700209›Full record

ArticleChemistry & biology2011

Evidence from Chlamydomonas on the photoactivation of rhodopsins without isomerization of their chromophore.

Kenneth W Foster, Jureepan Saranak, Sonja Krane, Randy L Johnson, Koji Nakanishi

Abstract read
In one paragraph

Article in Chemistry & biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.1field-weighted citation impact, top 48% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Ultrafast protein response in the Pfr state of Cph1 phytochrome.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Kenneth W FosterDepartment of Physics, Syracuse University, Syracuse, NY 13244, USA.
Jureepan Saranak
Sonja Krane
Randy L Johnson
Koji Nakanishi
Columbia University · USSyracuse University · US

Funding

STUDIES ON RHODOPSIN &AGE-RELATED MACULAR DEGENERATIONR01GM036564 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI NAKANISHI, KOJI · 1986 to 2006
$2.4M
Nonlinear dynamics of cellular signal transductionR01GM063527 · NIGMS · SYRACUSE UNIVERSITY · PI FOSTER, KENNETH WILIAM · 2001 to 2004
$1.3M
NIGMS NIH HHS GM36564NIGMS NIH HHS GM63527NIGMS NIH HHS R01 GM036564NIGMS NIH HHS R01 GM063527
6 · The paper itself

Abstract

Attachment of retinal to opsin forms the chromophore N-retinylidene, which isomerizes during photoactivation of rhodopsins. To test whether isomerization is crucial, custom-tailored chromophores lacking the β-ionone ring and any isomerizable bonds were incorporated in vivo into the opsin of a blind mutant of the eukaryote Chlamydomonas reinhardtii. The analogs restored phototaxis with the anticipated action spectra, ruling out the need for isomerization in photoactivation. To further elucidate photoactivation, responses to chromophores formed from naphthalene aldehydes were studied. The resulting action spectral shifts suggest that charge separation within the excited chromophore leads to electric field-induced polarization of nearby amino acid residues and altered hydrogen bonding. This redistribution of charge facilitates the reported multiple bond rotations and protein rearrangements of rhodopsin activation. These results provide insight into the activation of rhodopsins and related GPCRs.

Indexed as

Amino Acid SequenceBinding SitesChlamydomonas reinhardtiiHydrogen BondingIsomerismLightMolecular Sequence DataRetinaldehydeRetinoidsRhodopsinSequence AlignmentRetinaldehydeRetinoidsretinylidene chromophoreRhodopsin

Identifiers

PMID21700209
PMCPMC3400536
OpenAlexW1990734051

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.