Evidence map›Paper›PMID 21699228›Full record

ArticleJournal of proteome research2011

Quantitative analysis of cohesin complex stoichiometry and SMC3 modification-dependent protein interactions.

Chen Ding, Yehua Li, Beom-Jun Kim, Anna Malovannaya, Sung Yun Jung, Yi Wang, Jun Qin

Open access · greenAbstract readValidation Study
In one paragraph

Article in Journal of proteome research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Article
  3. It's all in the numbers: Cohesin stoichiometry.Frontiers in molecular biosciences · 2022
    Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Revealing Higher Order Protein Structure Using Mass Spectrometry.Journal of the American Society for Mass Spectrometry · 2016
    Article
  9. Article
  10. Review
  11. Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Chen DingCenter for Molecular Discovery, Verna and Marrs McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, Texas 77030, USA.
Yehua Li
Beom-Jun Kim
Anna Malovannaya
Sung Yun Jung
Yi Wang
Jun Qin
Baylor College of Medicine · US

Funding

BIOCHEMICAL ANALYSIS OF THE BRCA 1 PROTEIN COMPLEXR01CA084199 · NCI · BAYLOR COLLEGE OF MEDICINE · PI QIN, JUN · 2000 to 2007
$2.1M
Functional analysis of a putative ATM/ATR substrate RFWD3R01GM080703 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI WANG, YI · 2008 to 2012
$1.6M
Mechanisms of the Human S-phase DNA Damage CheckpointR01CA098500 · NCI · BAYLOR COLLEGE OF MEDICINE · PI QIN, JUN · 2003 to 2006
$1.1M
NCI NIH HHS R01 CA084199NCI NIH HHS R01 CA098500NCI NIH HHS R01 CA84199NCI NIH HHS R01 CA98500NIGMS NIH HHS GM080703NIGMS NIH HHS R01 GM080703
6 · The paper itself

Abstract

Cohesin is a protein complex that plays an essential role in pairing replicated sister chromatids during cell division. The vertebrate cohesin complex consists of four core components including structure maintenance of chromosomes proteins SMC1 and SMC3, RAD21, and SA2/SA1. Extensive research suggests that cohesin traps the sister chromatids by a V-shaped SMC1/SMC3 heterodimer bound to the RAD21 protein that closes the ring. Accordingly, the single "ring" model proposes that two sister chromatids are trapped in a single ring that is composed of one molecule each of the 4 subunits. However, evidence also exists for alternative models. The hand-cuff model suggests that each sister chromatid is trapped individually by two rings that are joined through the shared SA1/SA2 subunit. We report here the determination of cohesin subunit stoichiometry of endogenous cohesin complex by quantitative mass spectrometry. Using qConCAT-based isotope labeling, we show that the cohesin core complex contains equimolar of the 4 core components, suggesting that each cohesin ring is closed by one SA1/SA2 molecule. Furthermore, we applied this strategy to quantify post-translational modification-dependent cohesin interactions. We demonstrate that quantitative mass spectrometry is a powerful tool for measuring stoichiometry of endogenous protein core complex.

Indexed as

Cell Cycle ProteinsCell Line, TumorChromosomal Proteins, Non-HistoneCohesinsHumansImmunoprecipitationProtein BindingCell Cycle ProteinsChromosomal Proteins, Non-HistoneCohesins

Identifiers

PMID21699228
PMCPMC4226403
OpenAlexW2044311500

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.