Evidence map›Paper›PMID 21698098›Full record

ArticlePloS one2011

Variation in human recombination rates and its genetic determinants.

Adi Fledel-Alon, Ellen Miranda Leffler, Yongtao Guan, Matthew Stephens, Graham Coop, Molly Przeworski

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers.

0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed
5.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

74 citing papers in PubMed, 125 citations in OpenAlex.

  1. Article
  2. An Increase in Male Recombination Rate With Age in Dairy Cattle Is Heritable and Polygenic.Journal of animal breeding and genetics = Zeitschrift fur Tierzuchtung und Zuchtungsbiologie · 2026
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  14. Chromosome architecture and homologous recombination in meiosis.Frontiers in cell and developmental biology · 2022
    Review
  15. Genetic variation in recombination rate in the pig.Genetics, selection, evolution : GSE · 2021
    Article
  16. Article
  17. Article
  18. Article
  19. Molecular evolution of the meiotic recombination pathway in mammals.Evolution; international journal of organic evolution · 2019
    Article
  20. Article

14 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Adi Fledel-AlonDepartment of Human Genetics, University of Chicago, Chicago, Illinois, United States of America.
Ellen Miranda Leffler
Yongtao Guan
Matthew Stephens
Graham Coop
Molly Przeworski
University of Chicago · USUniversity of California, Davis · US

Funding

PREDOCTORAL TRAINING IN GENETICS AND REGULATIONT32GM007197 · NIGMS · UNIVERSITY OF CHICAGO · PI ROTHMAN-DENES, LUCIA B. B · 1985 to 2020
$17.0M
Genome analysis: statistical methods and applicationsR01HG002585 · NHGRI · UNIVERSITY OF WASHINGTON · PI MATTHEW STEPHENS · 2002 to 2026
$8.4M
Recombination rate variation and evolution in vertebratesR01GM083098 · NIGMS · UNIVERSITY OF CHICAGO · PI PRZEWORSKI, MOLLY F · 2007 to 2024
$4.6M
Genome analysis: statistical methods and applicationsR56HG002585 · NHGRI · UNIVERSITY OF CHICAGO · PI STEPHENS, MATTHEW · 2023 to 2023
$292k
Howard Hughes Medical InstituteNHGRI NIH HHS HG02585NHGRI NIH HHS R01 HG002585NHGRI NIH HHS R56 HG002585NIGMS NIH HHS GM083098NIGMS NIH HHS R01 GM083098NIGMS NIH HHS T32 GM007197NIGMS NIH HHS T32 GM07197
6 · The paper itself

Abstract

backgroundDespite the fundamental role of crossing-over in the pairing and segregation of chromosomes during human meiosis, the rates and placements of events vary markedly among individuals. Characterizing this variation and identifying its determinants are essential steps in our understanding of the human recombination process and its evolution. STUDY DESIGN/

resultsUsing three large sets of European-American pedigrees, we examined variation in five recombination phenotypes that capture distinct aspects of crossing-over patterns. We found that the mean recombination rate in males and females and the historical hotspot usage are significantly heritable and are uncorrelated with one another. We then conducted a genome-wide association study in order to identify loci that influence them. We replicated associations of RNF212 with the mean rate in males and in females as well as the association of Inversion 17q21.31 with the female mean rate. We also replicated the association of PRDM9 with historical hotspot usage, finding that it explains most of the genetic variance in this phenotype. In addition, we identified a set of new candidate regions for further validation. SIGNIFICANCE: These findings suggest that variation at broad and fine scales is largely separable and that, beyond three known loci, there is no evidence for common variation with large effects on recombination phenotypes.

Indexed as

Recombination, GeneticFemaleGenome-Wide Association StudyHumansMalePedigreePhenotypeWhite People

Identifiers

PMID21698098
PMCPMC3117798
OpenAlexW1999432643

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.