Evidence map›Paper›PMID 21697326›Full record

ArticleJournal of clinical microbiology2011

Multilaboratory evaluation of real-time PCR tests for hepatitis B virus DNA quantification.

Angela M Caliendo, Alexander Valsamakis, James W Bremer, Andrea Ferreira-Gonzalez, Suzanne Granger, Linda Sabatini, Gregory J Tsongalis, Yun F Wayne Wang, Belinda Yen-Lieberman, Steve Young and 1 more

Abstract readComparative StudyEvaluation Study
In one paragraph

Article in Journal of clinical microbiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Diagnosis of hepatitis B.Annals of translational medicine · 2016
    Review
  13. Article
  14. Article
  15. Update on hepatitis B and C virus diagnosis.World journal of virology · 2015
    Review
  16. Article
  17. Rapid detection of hepatitis B virus in blood plasma by a specific and sensitive loop-mediated isothermal amplification assay.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2014
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Angela M CaliendoEmory University Hospital, H180, 1364 Clifton Rd., Atlanta, GA 30322, USA. acalien@emory.edu
Alexander Valsamakis
James W Bremer
Andrea Ferreira-Gonzalez
Suzanne Granger
Linda Sabatini
Gregory J Tsongalis
Yun F Wayne Wang
Belinda Yen-Lieberman
Steve Young
Nell S Lurain

Funding

LC: HIV Prevention Trials Network - Laboratory Support for the SARS-CoV-2 Seroprevalence Study (CoVPN 5002)UM1AI068613 · NIAID · JOHNS HOPKINS UNIVERSITY · PI SUSAN H ESHLEMAN, Mark A Marzinke · 2011 to 2026
$100.2M
Virology and Molecular Biomarkers CoreP30AI050409 · NIAID · EMORY UNIVERSITY · PI Carlos del Rio · 2002 to 2026
$74.0M
HPTN CENTRAL LABORATORYU01AI046745 · NIAID · JOHNS HOPKINS UNIVERSITY · PI JACKSON, JAY B · 2000 to 2005
$20.8M
HIV Prevention Trials Network: Network LaboratoryU01AI068613 · NIAID · JOHNS HOPKINS UNIVERSITY · PI ESHLEMAN, SUSAN H · 2006 to 2010
$16.5M
DAIDS VIROLOGY QUALITY ASSURANCE PROGRAMN01AI035172 · NIAID · RUSH UNIVERSITY MEDICAL CENTER · PI BREMER, JAMES W. · 1993 to 1998
–
NIAID NIH HHS N01-AI35172NIAID NIH HHS P30 AI050409NIAID NIH HHS U01 AI046745NIAID NIH HHS U01 AI068613NIAID NIH HHS U01-AI-068613NIAID NIH HHS U01-AI-46745
6 · The paper itself

Abstract

The performance characteristics of four different assays for hepatitis B virus (HBV) quantification were assessed: the Abbott RealTime HBV IUO, the Roche Cobas AmpliPrep/Cobas TaqMan HBV test, the Roche Cobas TaqMan HBV test with HighPure system, and the Qiagen artus HBV TM ASR. Limit of detection (LOD), linear range, reproducibility, and agreement were determined using a serially diluted plasma sample from a single chronically infected subject. Each assay was tested by at least three laboratories. The LOD of the RealTime and two TaqMan assays was approximately 1.0 log(10) IU/ml; for artus HBV (which used the lowest volume of extracted DNA), it was approximately 1.5 log(10) IU/ml. The linear range spanned 1.0 to at least 7.0 log(10) IU/ml for all assays. Median values were consistently lowest for artus HBV and highest for Cobas AmpliPrep/Cobas TaqMan HBV. Assays incorporating automated nucleic acid extraction were the most reproducible; however, the overall variability was minor since the standard deviations for the means of all tested concentrations were ≤0.32 log(10) IU/ml for all assays. False-positive results were observed with all assays; the highest rates occurred with tests using manual nucleic acid extraction. The performance characteristics of these assays suggest that they are useful for management and therapeutic monitoring of chronic HBV infection.

Indexed as

DNA, ViralHepatitis BHepatitis B virusHumansPlasmaReal-Time Polymerase Chain ReactionReproducibility of ResultsSensitivity and SpecificityViral LoadDNA, Viral

Identifiers

PMID21697326
PMCPMC3147738

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.