Evidence map›Paper›PMID 21694734›Full record

ArticleEuropean journal of human genetics : EJHG2011

Copy number variants and infantile spasms: evidence for abnormalities in ventral forebrain development and pathways of synaptic function.

Alex R Paciorkowski, Liu Lin Thio, Jill A Rosenfeld, Marzena Gajecka, Christina A Gurnett, Shashikant Kulkarni, Wendy K Chung, Eric D Marsh, Mattia Gentile, James D Reggin and 9 more

Open access · bronzeAbstract read
In one paragraph

Article in European journal of human genetics : EJHG, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 82 citations in OpenAlex.

  1. Trial
  2. Article
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  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. International journal of molecular sciences · 2019
    Review
  11. Article
  12. Epileptogenesis in neonatal brain.Seminars in fetal & neonatal medicine · 2018
    Review
  13. Observational
  14. Review
  15. Article
  16. Article
  17. Inflammation in Epileptic Encephalopathies.Advances in protein chemistry and structural biology · 2017
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 11 institutions in 3 countries.

Alex R PaciorkowskiDepartments of Neurology and Pediatrics, Washington University, St Louis, MO, USA. arpac@u.washington.edu
Liu Lin Thio
Jill A Rosenfeld
Marzena Gajecka
Christina A Gurnett
Shashikant Kulkarni
Wendy K Chung
Eric D Marsh
Mattia Gentile
James D Reggin
James W Wheless
Sandhya Balasubramanian
Ravinesh Kumar
Susan L Christian
Carla Marini
Renzo Guerrini
Natalia Maltsev
Lisa G Shaffer
William B Dobyns
University of Chicago · USMeyer Children's Hospital · ITSignature Research (United States) · USSt. Louis Children's Hospital · USWashington University in St. Louis · USChildren's Hospital of Philadelphia · USColumbia University · USGastroenterology Hospital "Saverio de Bellis" · ITPolish Academy of Sciences · PLProvidence Sacred Heart Medical Center · USUniversity of Washington · US

Funding

NEUROLOGICAL SCIENCES ACADEMIC DEVELOPMENT AWARD(INST)K12NS001690 · NINDS · WASHINGTON UNIVERSITY · PI WONG, MICHAEL · 1993 to 2018
$5.2M
The Role of ARX in Normal and Abnormal Brain DevelopmentR01NS046616 · NINDS · CHILDREN'S HOSP OF PHILADELPHIA · PI GOLDEN, JEFFREY A · 2005 to 2013
$4.1M
NINDS NIH HHS K12 NS001690NINDS NIH HHS K12 NS001690-12NINDS NIH HHS R01 NS046616NINDS NIH HHS R01-NS046616
6 · The paper itself

Abstract

Infantile spasms (ISS) are an epilepsy disorder frequently associated with severe developmental outcome and have diverse genetic etiologies. We ascertained 11 subjects with ISS and novel copy number variants (CNVs) and combined these with a new cohort with deletion 1p36 and ISS, and additional published patients with ISS and other chromosomal abnormalities. Using bioinformatics tools, we analyzed the gene content of these CNVs for enrichment in pathways of pathogenesis. Several important findings emerged. First, the gene content was enriched for the gene regulatory network involved in ventral forebrain development. Second, genes in pathways of synaptic function were overrepresented, significantly those involved in synaptic vesicle transport. Evidence also suggested roles for GABAergic synapses and the postsynaptic density. Third, we confirm the association of ISS with duplication of 14q12 and maternally inherited duplication of 15q11q13, and report the association with duplication of 21q21. We also present a patient with ISS and deletion 7q11.3 not involving MAGI2. Finally, we provide evidence that ISS in deletion 1p36 may be associated with deletion of KLHL17 and expand the epilepsy phenotype in that syndrome to include early infantile epileptic encephalopathy. Several of the identified pathways share functional links, and abnormalities of forebrain synaptic growth and function may form a common biologic mechanism underlying both ISS and autism. This study demonstrates a novel approach to the study of gene content in subjects with ISS and copy number variation, and contributes further evidence to support specific pathways of pathogenesis.

Indexed as

Gene DosageChromosome AberrationsComputational BiologyGene Regulatory NetworksGenetic LociHumansInfantInfant, NewbornProsencephalonSpasms, InfantileSynaptic Transmission

Identifiers

PMID21694734
PMCPMC3230360
OpenAlexW2024231840

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.