Evidence map›Paper›PMID 21689631›Full record

ArticleArchives of biochemistry and biophysics2011

Structure of Candida albicans methionine synthase determined by employing surface residue mutagenesis.

Devinder Ubhi, Kathryn L Kavanagh, Arthur F Monzingo, Jon D Robertus

Abstract read
In one paragraph

Article in Archives of biochemistry and biophysics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
  2. The cellular economy of the Saccharomyces cerevisiae zinc proteome.Metallomics : integrated biometal science · 2018
    Article
  3. Methionine synthase is localized to the nucleus inThe Journal of biological chemistry · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Devinder UbhiInstitute for Cellular and Molecular Biology, Department of Chemistry and Biochemistry, University of Texas at Austin, United States.
Kathryn L Kavanagh
Arthur F Monzingo
Jon D Robertus
The University of Texas at Austin · US

Funding

Targeting the NS1 Protein for the Development of Influenza Virus AntiviralsU01AI074497 · NIAID · UNIVERSITY OF TEXAS AT AUSTIN · PI KRUG, ROBERT M · 2007 to 2011
$4.9M
Small molecule inhibitors of ricin and shiga toxinsU01AI075509 · NIAID · UNIVERSITY OF TEXAS AT AUSTIN · PI ROBERTUS, JON D · 2007 to 2011
$3.1M
NIAID NIH HHS AI 074497NIAID NIH HHS U01 AI074497NIAID NIH HHS U01 AI075509
6 · The paper itself

Abstract

Fungal methionine synthase, Met6p, transfers a methyl group from 5-methyl-tetrahydrofolate to homocysteine to generate methionine. The enzyme is essential to fungal growth and is a potential anti-fungal drug design target. We have characterized the enzyme from the pathogen Candida albicans but were unable to crystallize it in native form. We converted Lys103, Lys104, and Glu107 all to Tyr (Met6pY), Thr (Met6pT) and Ala (Met6pA). All variants showed wild-type kinetic activity and formed useful crystals, each with unique crystal packing. In each case the mutated residues participated in beneficial crystal contacts. We have solved the three structures at 2.0-2.8Å resolution and analyzed crystal packing, active-site residues, and similarity to other known methionine synthase structures. C. albicans Met6p has a two domain structure with each of the domains having a (βα)(8)-barrel fold. The barrels are arranged face-to-face and the active site is located in a cleft between the two domains. Met6p utilizes a zinc ion for catalysis that is bound in the C-terminal domain and ligated by four conserved residues: His657, Cys659, Glu679 and Cys739.

Indexed as

5-Methyltetrahydrofolate-Homocysteine S-MethyltransferaseAmino Acid SubstitutionCandida albicansCatalysisCrystallography, X-RayFungal ProteinsMutation, MissenseProtein Structure, TertiaryStructure-Activity Relationship5-Methyltetrahydrofolate-Homocysteine S-MethyltransferaseFungal Proteins

Identifiers

PMID21689631
PMCPMC3152699
OpenAlexW1997880856

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.