Evidence map›Paper›PMID 21685874›Full record

ArticleThe EMBO journal2011

Sgf29 binds histone H3K4me2/3 and is required for SAGA complex recruitment and histone H3 acetylation.

Chuanbing Bian, Chao Xu, Jianbin Ruan, Kenneth K Lee, Tara L Burke, Wolfram Tempel, Dalia Barsyte, Jing Li, Minhao Wu, Bo O Zhou and 9 more

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 164 papers.

0numbers the graph read from it
0cells of the map it votes in
164citing papers in PubMed
8.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

164 citing papers in PubMed, 273 citations in OpenAlex.

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104 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 8 institutions in 3 countries.

Chuanbing BianSchool of Life Sciences, University of Science and Technology of China, Anhui, People's Republic of China.
Chao Xu
Jianbin Ruan
Kenneth K Lee
Tara L Burke
Wolfram Tempel
Dalia Barsyte
Jing Li
Minhao Wu
Bo O Zhou
Brian E Fleharty
Ariel Paulson
Abdellah Allali-Hassani
Jin-Qiu Zhou
Georges Mer
Patrick A Grant
Jerry L Workman
Jianye Zang
Jinrong Min
Stowers Institute for Medical Research · USUniversity of Science and Technology of China · CNStructural Genomics Consortium · CAUniversity of Toronto · CAUniversity of Virginia · USChinese Academy of Sciences · CNMayo Clinic in Arizona · USShanghai Institutes for Biological Sciences · CN

Funding

Structural Biology of Lysine Methylation in DNA Damage and Checkpoint SignalingR01CA132878 · NCI · MAYO CLINIC ROCHESTER · PI Georges Mer · 2008 to 2026
$4.5M
MECHANISMS OF TRANSCRIPTIONAL REGULATION IN CHROMATINR01GM047867 · NIGMS · STOWERS INSTITUTE FOR MEDICAL RESEARCH · PI WORKMAN, JERRY L · 1992 to 2014
$1.5M
COPPER METALLO-BIOCHEMISTRY IN SACCHAROMYCES CEREVISIAER01GM046787 · NIGMS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI KOSMAN, DANIEL J. · 1992 to 2002
$804k
CIHRNCI NIH HHS CA132878NCI NIH HHS R01 CA132878NIGMS NIH HHS GM46787NIGMS NIH HHS R01 GM047867Wellcome Trust
6 · The paper itself

Abstract

The SAGA (Spt-Ada-Gcn5 acetyltransferase) complex is an important chromatin modifying complex that can both acetylate and deubiquitinate histones. Sgf29 is a novel component of the SAGA complex. Here, we report the crystal structures of the tandem Tudor domains of Saccharomyces cerevisiae and human Sgf29 and their complexes with H3K4me2 and H3K4me3 peptides, respectively, and show that Sgf29 selectively binds H3K4me2/3 marks. Our crystal structures reveal that Sgf29 harbours unique tandem Tudor domains in its C-terminus. The tandem Tudor domains in Sgf29 tightly pack against each other face-to-face with each Tudor domain harbouring a negatively charged pocket accommodating the first residue alanine and methylated K4 residue of histone H3, respectively. The H3A1 and K4me3 binding pockets and the limited binding cleft length between these two binding pockets are the structural determinants in conferring the ability of Sgf29 to selectively recognize H3K4me2/3. Our in vitro and in vivo functional assays show that Sgf29 recognizes methylated H3K4 to recruit the SAGA complex to its targets sites and mediates histone H3 acetylation, underscoring the importance of Sgf29 in gene regulation.

Indexed as

Gene Expression RegulationAcetylationAcetyltransferasesAmino Acid SequenceBlotting, WesternChromatin ImmunoprecipitationHistone AcetyltransferasesHistonesHumansMolecular Sequence DataPeptide FragmentsProtein Processing, Post-TranslationalProtein Structure, TertiaryReverse Transcriptase Polymerase Chain ReactionRNA, MessengerSaccharomyces cerevisiaeAcetyltransferasesHistone AcetyltransferasesHistonesPeptide FragmentsRNA, MessengerSaccharomyces cerevisiae ProteinsSAGA complex, S cerevisiaeSgf29 protein, humanSgf29 protein, S cerevisiaeTrans-Activators

Identifiers

PMID21685874
PMCPMC3160252
OpenAlexW1886386345

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.