Evidence map›Paper›PMID 21685389›Full record

ArticleThe Journal of biological chemistry2011

Molecular adaptation of the DegQ protease to exert protein quality control in the bacterial cell envelope.

Justyna Sawa, Hélène Malet, Tobias Krojer, Flavia Canellas, Michael Ehrmann, Tim Clausen

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. HtrAs are essential for the survival of the haloarchaeonApplied and environmental microbiology · 2024
    Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Oligomeric assembly regulating mitochondrial HtrA2 function as examined by methyl-TROSY NMR.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  11. How do Chaperones Bind (Partly) Unfolded Client Proteins?Frontiers in molecular biosciences · 2021
    Review
  12. Development of Resistance inAntibiotics (Basel, Switzerland) · 2020
    Article
  13. The unique trimeric assembly of the virulence factor HtrA fromThe Journal of biological chemistry · 2019
    Article
  14. Article
  15. Amino-Terminal Processing ofFrontiers in microbiology · 2018
    Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Justyna SawaInstitute of Molecular Pathology, A-1030 Vienna, Austria.
Hélène MaletDepartment of Biological Sciences, Institute of Structural Molecular Biology, Birkbeck College, London WC1E 7HX, United Kingdom.
Tobias KrojerInstitute of Molecular Pathology, A-1030 Vienna, Austria.
Flavia CanellasInstitute of Molecular Pathology, A-1030 Vienna, Austria.
Michael EhrmannCentre for Medical Biotechnology, Faculty of Biology and Geography, University Duisburg-Essen, 45117 Essen, Germany.
Tim ClausenInstitute of Molecular Pathology, A-1030 Vienna, Austria. Electronic address: clausen@imp.univie.ac.at.
Research Institute of Molecular Pathology · ATBirkbeck, University of London · GBUniversity of Duisburg-Essen · DE

Funding

Austrian Science Fund FWF I 235
6 · The paper itself

Abstract

To react to distinct stress situations and to prevent the accumulation of misfolded proteins, all cells employ a number of proteases and chaperones, which together set up an efficient protein quality control system. The functionality of proteins in the cell envelope of Escherichia coli is monitored by the HtrA proteases DegS, DegP, and DegQ. In contrast with DegP and DegS, the structure and function of DegQ has not been addressed in detail. Here, we show that substrate binding triggers the conversion of the resting DegQ hexamer into catalytically active 12- and 24-mers. Interestingly, substrate-induced oligomer reassembly and protease activation depends on the first PDZ domain but not on the second. Therefore, the regulatory mechanism originally identified in DegP should be a common feature of HtrA proteases, most of which encompass only a single PDZ domain. Using a DegQ mutant lacking the second PDZ domain, we determined the high resolution crystal structure of a dodecameric HtrA complex. The nearly identical domain orientation of protease and PDZ domains within 12- and 24-meric HtrA complexes reveals a conserved PDZ1 → L3 → LD/L1/L2 signaling cascade, in which loop L3 senses the repositioned PDZ1 domain of higher order, substrate-engaged particles and activates protease function. Furthermore, our in vitro and in vivo data imply a pH-related function of DegQ in the bacterial cell envelope.

Indexed as

Allosteric SiteBacterial ProteinsCalorimetryCell MembraneChromatography, GelCrystallizationCrystallography, X-RayEscherichia coli ProteinsHeat-Shock ProteinsHydrogen-Ion ConcentrationMolecular ConformationPeriplasmic ProteinsProtein BindingProtein Structure, TertiarySerine EndopeptidasesSerine ProteasesBacterial ProteinsDegP proteaseDegQ protein, E coliDegS protein, BacteriaEscherichia coli ProteinsHeat-Shock ProteinsPeriplasmic ProteinsSerine EndopeptidasesSerine Proteases

Identifiers

PMID21685389
PMCPMC3162429
OpenAlexW2139603922

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.