Evidence map›Paper›PMID 21685365›Full record

ArticleGenes & development2011

An evolutionarily 'young' lysine residue in histone H3 attenuates transcriptional output in Saccharomyces cerevisiae.

Edel M Hyland, Henrik Molina, Kunal Poorey, Chunfa Jie, Zhi Xie, Junbiao Dai, Jiang Qian, Stefan Bekiranov, David T Auble, Akhilesh Pandey and 1 more

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 29 citations in OpenAlex.

  1. Investigation of the acetic acid stress response inMicrobial cell (Graz, Austria) · 2023
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  13. H3R42me2a is a histone modification with positive transcriptional effects.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  14. Review
  15. Review
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Edel M HylandHigh Throughput Biology Center, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA.
Henrik Molina
Kunal Poorey
Chunfa Jie
Zhi Xie
Junbiao Dai
Jiang Qian
Stefan Bekiranov
David T Auble
Akhilesh Pandey
Jef D Boeke
Johns Hopkins University · USUniversity of Virginia · USHigh Throughput Biology (United States) · USHarvard University Press · USJohns Hopkins Medicine · US

Funding

TCP5: ACTIVE SITE LABELING REAGENT FOR ACETYLTRANSFERASESU54RR020839 · NCRR · JOHNS HOPKINS UNIVERSITY · PI BOEKE, JEF D · 2004 to 2011
$27.4M
MOLECULAR ANALYSIS OF A YEAST TRANSCRIPTIONAL REGULATORR01GM055763 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI AUBLE, DAVID T. · 1997 to 2021
$6.4M
NCRR NIH HHS U54 RR020839NCRR NIH HHS U54RR020839NIGMS NIH HHS GM55763NIGMS NIH HHS R01 GM055763
6 · The paper itself

Abstract

The DNA entry and exit points on the nucleosome core regulate the initial invasion of the nucleosome by factors requiring access to the underlying DNA. Here we describe in vivo consequences of eliminating a single protein-DNA interaction at this position through mutagenesis of histone H3 Lys 42 to alanine. This substitution has a dramatic effect on the Saccharomyces cerevisiae transcriptome in both the transcriptional output and landscape of mRNA species produced. We attribute this in part to decreased histone H3 occupancy at transcriptionally active loci, leading to enhanced elongation. Additionally we show that this lysine is methylated in vivo, and genetic studies of methyl-lysine mimics suggest that this modification may be crucial in attenuating gene expression. Interestingly, this site of methylation is unique to Ascomycota, suggesting a recent evolutionary innovation that highlights the evolvability of post-translational modifications of chromatin.

Indexed as

Evolution, MolecularGene Expression Regulation, FungalChromatinDNA MethylationGene Expression ProfilingHistonesLysineModels, MolecularMutationNuclear ProteinsPeptide Elongation FactorsPhenotypeProtein Structure, TertiarySaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsChromatinHistonesLysineNuclear ProteinsPAF1 protein, S cerevisiaePeptide Elongation FactorsSaccharomyces cerevisiae Proteins

Identifiers

PMID21685365
PMCPMC3127431
OpenAlexW2133143024

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.