Evidence map›Paper›PMID 21685127›Full record

ArticleGenome research2011

Gorilla genome structural variation reveals evolutionary parallelisms with chimpanzee.

Mario Ventura, Claudia R Catacchio, Can Alkan, Tomas Marques-Bonet, Saba Sajjadian, Tina A Graves, Fereydoun Hormozdiari, Arcadi Navarro, Maika Malig, Carl Baker and 8 more

Abstract read
In one paragraph

Article in Genome research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed.

  1. Chromosome painting in plants: history and future perspectives.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2026
    Review
  2. Article
  3. Article
  4. Fine mapping and cloning of an intersubspecific reproductive isolation locusMolecular breeding : new strategies in plant improvement · 2026
    Article
  5. Origin and evolution of acrocentric chromosomes in human and great apes.bioRxiv : the preprint server for biology · 2025
    Article
  6. Epigenetic and evolutionary features of ape subterminal heterochromatin.bioRxiv : the preprint server for biology · 2025
    Article
  7. Article
  8. Article
  9. Article
  10. Complete sequencing of ape genomes.bioRxiv : the preprint server for biology · 2024
    Article
  11. Article
  12. Structural Variation Evolution at the 15q11-q13 Disease-Associated Locus.International journal of molecular sciences · 2023
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Mario VenturaDepartment of Genome Sciences, University of Washington School of Medicine, Seattle, Washington 98195, USA.
Claudia R Catacchio
Can Alkan
Tomas Marques-Bonet
Saba Sajjadian
Tina A Graves
Fereydoun Hormozdiari
Arcadi Navarro
Maika Malig
Carl Baker
Choli Lee
Emily H Turner
Lin Chen
Jeffrey M Kidd
Nicoletta Archidiacono
Jay Shendure
Richard K Wilson
Evan E Eichler

Funding

Large Scale Genome SequencingU54HG003079 · NHGRI · WASHINGTON UNIVERSITY · PI DUTCHER, SUSAN K · 2004 to 2016
$445.7M
Sequence and Assembly of Segmental DuplicationsR01HG002385 · NHGRI · UNIVERSITY OF WASHINGTON · PI Evan Eichler · 2001 to 2026
$13.3M
European Research Council 260372Howard Hughes Medical InstituteNHGRI NIH HHS HG002385NHGRI NIH HHS R01 HG002385NHGRI NIH HHS U54 HG003079
6 · The paper itself

Abstract

Structural variation has played an important role in the evolutionary restructuring of human and great ape genomes. Recent analyses have suggested that the genomes of chimpanzee and human have been particularly enriched for this form of genetic variation. Here, we set out to assess the extent of structural variation in the gorilla lineage by generating 10-fold genomic sequence coverage from a western lowland gorilla and integrating these data into a physical and cytogenetic framework of structural variation. We discovered and validated over 7665 structural changes within the gorilla lineage, including sequence resolution of inversions, deletions, duplications, and mobile element insertions. A comparison with human and other ape genomes shows that the gorilla genome has been subjected to the highest rate of segmental duplication. We show that both the gorilla and chimpanzee genomes have experienced independent yet convergent patterns of structural mutation that have not occurred in humans, including the formation of subtelomeric heterochromatic caps, the hyperexpansion of segmental duplications, and bursts of retroviral integrations. Our analysis suggests that the chimpanzee and gorilla genomes are structurally more derived than either orangutan or human genomes.

Indexed as

Evolution, MolecularGenomic Structural VariationAnimalsBase SequenceChromosome MappingChromosome StructuresComparative Genomic HybridizationGorilla gorillaHumansIn Situ Hybridization, FluorescenceKaryotypeMolecular Sequence DataPan troglodytesSegmental Duplications, GenomicSequence Analysis, DNA

Identifiers

PMID21685127
PMCPMC3202281

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.