ArticleBioinformatics (Oxford, England)2011
Tanglegrams for rooted phylogenetic trees and networks.
Article in Bioinformatics (Oxford, England), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.
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Who cites it
44 citing papers in PubMed.
- CRESS domain-based molecular characterization of Begomovirus gossypimultanense.Molecular biology reports · 2026Article
- Displacement-Optimized Tanglegrams for Trees and Networks.Molecular biology and evolution · 2026Article
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- A Pandemic-Scale Ancestral Recombination Graph for SARS-CoV-2.bioRxiv : the preprint server for biology · 2025Article
- Taxonomic expansion and reorganization of Flaviviridae.Nature microbiology · 2025Article
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- Integrated analysis of protein sequence and structure redefines viral diversity and the taxonomy of thebioRxiv : the preprint server for biology · 2025Article
- Phylogeny-guided genome mining of roseocin family lantibiotics to generate improved variants of roseocin.AMB Express · 2023Article
- Epidemiological Investigation of Hospital Transmission of Corynebacterium striatum Infection by Core Genome Multilocus Sequence Typing Approach.Microbiology spectrum · 2023Article
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- How To Be a Successful Monopartite Begomovirus in a Bipartite-Dominated World: Emergence and Spread of Tomato Mottle Leaf Curl Virus in Brazil.Journal of virology · 2022Article
- Translocation of mitochondrial DNA into the nuclear genome blurs phylogeographic and conservation genetic studies in seabirds.Royal Society open science · 2022Article
- A vectorial tree distance measure.Scientific reports · 2022Article
- Genomic alterations and evolution of cell clusters in metastatic invasive micropapillary carcinoma of the breast.Nature communications · 2022Article
- Genetic and phylogenetic analysis of dissimilatory iodate-reducing bacteria identifies potential niches across the world's oceans.The ISME journal · 2022Article
- Comparative Analysis of Short- and Long-Read Sequencing of Vancomycin-Resistant Enterococci for Application to Molecular Epidemiology.Frontiers in cellular and infection microbiology · 2022Article
- Shuffle & untangle: novel untangle methods for solving the tanglegram layout problem.Bioinformatics advances · 2022Article
- Establishment of a Publicly Available Core Genome Multilocus Sequence Typing Scheme for Clostridium perfringens.Microbiology spectrum · 2021Article
- The "evil tribe" spreads across the land: A dated molecular phylogeny provides insight into dispersal, expansion, and biogeographic relationships within one of the largest tribes of the sunflower family (Vernonieae: Compositae).American journal of botany · 2021Article
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Authors and funding
3 authors.
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No grant is acknowledged in the PubMed record.
Abstract
motivationIn systematic biology, one is often faced with the task of comparing different phylogenetic trees, in particular in multi-gene analysis or cospeciation studies. One approach is to use a tanglegram in which two rooted phylogenetic trees are drawn opposite each other, using auxiliary lines to connect matching taxa. There is an increasing interest in using rooted phylogenetic networks to represent evolutionary history, so as to explicitly represent reticulate events, such as horizontal gene transfer, hybridization or reassortment. Thus, the question arises how to define and compute a tanglegram for such networks.
resultsIn this article, we present the first formal definition of a tanglegram for rooted phylogenetic networks and present a heuristic approach for computing one, called the NN-tanglegram method. We compare the performance of our method with existing tree tanglegram algorithms and also show a typical application to real biological datasets. For maximum usability, the algorithm does not require that the trees or networks are bifurcating or bicombining, or that they are on identical taxon sets. AVAILABILITY: The algorithm is implemented in our program Dendroscope 3, which is freely available from www.dendroscope.org. CONTACT: scornava@informatik.uni-tuebingen.de; huson@informatik.uni-tuebingen.de.
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