Evidence map›Paper›PMID 21683259›Full record

ArticleMethods in enzymology2011

Using C. elegans to identify the protease targets of serpins in vivo.

Sangeeta R Bhatia, Mark T Miedel, Cavita K Chotoo, Nathan J Graf, Brian L Hood, Thomas P Conrads, Gary A Silverman, Cliff J Luke

Abstract read
In one paragraph

Article in Methods in enzymology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.6field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Protein interactome mapping inCurrent opinion in systems biology · 2019
    Review
  3. Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Sangeeta R BhatiaDepartment of Pediatrics, Children's Hospital of Pittsburgh, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, USA.
Mark T Miedel
Cavita K Chotoo
Nathan J Graf
Brian L Hood
Thomas P Conrads
Gary A Silverman
Cliff J Luke
University of Pittsburgh · USUPMC Hillman Cancer Center · USChildren's Hospital of Pittsburgh · US

Funding

Molecular Basis of Pediatric DiseaseK12HD052892 · NICHD · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI TERENCE S. DERMODY · 2007 to 2026
$6.5M
High Throughput Genetic and Drug Screens for Alph-1-Antitrypsin DeficiencyR01DK079806 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI SILVERMAN, GARY ARTHUR · 2008 to 2011
$2.4M
Intracellular Serpin Regulation of Intestinal Cell NecrosisR01DK081422 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI SILVERMAN, GARY ARTHUR · 2009 to 2012
$1.6M
The Role of Intracellular Serpins in the Regulation of NecrosisF32DK086112 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MIEDEL, MARK T. · 2010 to 2012
$153k
NICHD NIH HHS HD052892NICHD NIH HHS K12 HD052892NIDDK NIH HHS DK079806NIDDK NIH HHS DK081422NIDDK NIH HHS F32 DK086112NIDDK NIH HHS F32DK086112NIDDK NIH HHS R01 DK079806NIDDK NIH HHS R01 DK081422
6 · The paper itself

Abstract

Most serpins inhibit serine and/or cysteine proteases, and their inhibitory activities are usually defined in vitro. However, the physiological protease targets of most serpins are unknown despite many years of research. This may be due to the rapid degradation of the inactive serpin:protease complexes and/or the conditions under which the serpin inhibits the protease. The model organism Caenorhabditis elegans is an ideal system for identifying protease targets due to powerful forward and reverse genetics, as well as the ease of creating transgenic animals. Using combinatorial approaches of genetics and biochemistry in C. elegans, the true in vivo protease targets of the endogenous serpins can be elucidated.

Indexed as

AnimalsCaenorhabditis elegansImmunoprecipitationPeptide HydrolasesSerpinsPeptide HydrolasesSerpins

Identifiers

PMID21683259
PMCPMC4374438
OpenAlexW1569433047

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.