ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2011
Association mapping in an elite maize breeding population.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.
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Who cites it
36 citing papers in PubMed.
- A combination of joint linkage and genome-wide association study reveals putative candidate genes associated with resistance to northern corn leaf blight in tropical maize.Frontiers in plant science · 2024Article
- Genome-wide marker effect heterogeneity is associated with a large effect dormancy locus in winter malting barley.The plant genome · 2022Article
- High-resolution association mapping with libraries of immortalized lines from ancestral landraces.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Article
- Development of an Australian Bread Wheat Nested Association Mapping Population, a New Genetic Diversity Resource for Breeding under Dry and Hot Climates.International journal of molecular sciences · 2021Article
- Identification of QTLs conferring resistance to scald (Rhynchosporium commune) in the barley nested association mapping population HEB-25.BMC genomics · 2020Article
- Combination of Linkage Mapping, GWAS, and GP to Dissect the Genetic Basis of Common Rust Resistance in Tropical Maize Germplasm.International journal of molecular sciences · 2020Article
- Genetic Dissection of Resistance to Gray Leaf Spot by Combining Genome-Wide Association, Linkage Mapping, and Genomic Prediction in Tropical Maize Germplasm.Frontiers in plant science · 2020Article
- Genetic architecture of maize chlorotic mottle virus and maize lethal necrosis through GWAS, linkage analysis and genomic prediction in tropical maize germplasm.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019Article
- Genome-wide association of barley plant growth under drought stress using a nested association mapping population.BMC plant biology · 2019Article
- Combined linkage and association mapping reveal QTL for host plant resistance to common rust (Puccinia sorghi) in tropical maize.BMC plant biology · 2018Article
- Adaptive selection of founder segments and epistatic control of plant height in the MAGIC winter wheat population WM-800.BMC genomics · 2018Article
- Genome-wide association of yield traits in a nested association mapping population of barley reveals new gene diversity for future breeding.Journal of experimental botany · 2018Article
- Contrasting genetic regulation of plant development in wild barley grown in two European environments revealed by nested association mapping.Journal of experimental botany · 2018Article
- Genome-Wide Association Analysis of Grain Yield-Associated Traits in a Pan-European Barley Cultivar Collection.The plant genome · 2018Article
- Discovery and validation of genomic regions associated with resistance to maize lethal necrosis in four biparental populations.Molecular breeding : new strategies in plant improvement · 2018Article
- Association mapping of drought tolerance-related traits in barley to complement a traditional biparental QTL mapping study.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018Article
- Article
- Quantitative trait loci from identification to exploitation for crop improvement.Plant cell reports · 2017Review
- Estimating parent-specific QTL effects through cumulating linked identity-by-state SNP effects in multiparental populations.Heredity · 2017Article
- Article
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8 authors.
Funding
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Abstract
Association mapping (AM) is a powerful approach to dissect the genetic architecture of quantitative traits. The main goal of our study was to empirically compare several statistical methods of AM using data of an elite maize breeding program with respect to QTL detection power and possibility to correct for population stratification. These models were based on the inclusion of cofactors (Model A), cofactors and population effect (Model B), and SNP effects nested within populations (Model C). A total of 930 testcross progenies of an elite maize breeding population were field-evaluated for grain yield and grain moisture in multi-location trials and fingerprinted with 425 SNP markers. For grain yield, population stratification was effectively controlled by Model A. For grain moisture with a high ratio of variance among versus within populations, Model B should be applied in order to avoid potential false positives. Model C revealed large differences among allele substitution effects for trait-associated SNPs across multiple plant breeding populations. This heterogeneous SNP allele substitution effects have a severe impact for genomic selection studies, where SNP effects are often assumed to be independent of the genetic background.
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