ArticleMolecular biology reports2012
The complete mitochondrial genome of two recently derived species of the fish genus Nannoperca (Perciformes, Percichthyidae).
Article in Molecular biology reports, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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20 citing papers in PubMed, 63 citations in OpenAlex.
- A comprehensive study on the mitochondrial genome of Volva habei and exploring phylogenetic relationships in Littorinimorpha.Scientific reports · 2024Article
- Addressing the complex phylogenetic relationship of the Gempylidae fishes using mitogenome data.Ecology and evolution · 2023Article
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- Mitochondrial Genome Structures and Phylogenetic Analyses of Two Tropical Characidae Fishes.Frontiers in genetics · 2021Article
- Complete mitochondrial genome ofMitochondrial DNA. Part B, Resources · 2021Article
- The complete mitochondrial genome of the hybrid ofMitochondrial DNA. Part B, Resources · 2019Article
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- Phylogenomic history of enigmatic pygmy perches: implications for biogeography, taxonomy and conservation.Royal Society open science · 2018Article
- New microbial resource: microbial diversity, function and dynamics in Chinese liquor starter.Scientific reports · 2017Article
- The complete mitochondrial genome of the hybrid ofMitochondrial DNA. Part B, Resources · 2017Article
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- Integrative taxonomy supports new candidate fish species in a poorly studied neotropical region: the Jequitinhonha River Basin.Genetica · 2016Article
- The complete mitochondrial genome of the hybrid ofMitochondrial DNA. Part B, Resources · 2016Article
- Assembly and variation analyses of Clarias batrachus mitogenome retrieved from WGS data and its phylogenetic relationship with other catfishes.Meta gene · 2015Article
- Characterisation of the complete mitochondrial genome and 13 microsatellite loci through next-generation sequencing for the New Caledonian spider-ant Leptomyrmex pallens.Molecular biology reports · 2014Article
- Integrated shotgun sequencing and bioinformatics pipeline allows ultra-fast mitogenome recovery and confirms substantial gene rearrangements in Australian freshwater crayfishes.BMC evolutionary biology · 2014Article
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- Applications for next-generation sequencing in fish ecotoxicogenomics.Frontiers in genetics · 2012Article
- The complete mitochondrial genome of the threatened Neotropical catfish Lophiosilurus alexandri (Silurifomes: Pseudopimelodidae) and phylogenomic analysis indicate monophyly of Pimelodoidea.Genetics and molecular biologyArticle
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Authors and funding
4 authors at 3 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Here we report the complete sequence of mitochondrial genomes for two sister taxa of freshwater teleosts, the recently derived Yarra pigmy perch Nannoperca obscura and the southern pigmy perch Nannoperca australis. These represent the first complete mitochondrial genomes for Percichthyidae (Perciformes), a family mostly distributed in Australia. The de novo genome assembly of 316,430 pyrosequencing reads from 454 libraries has produced the entire mitochondria for N. obscura and a nearly complete version for N. australis. The mtDNA genome from the latter was completed through the design of one primer set and standard Sanger sequencing for genome finishing, followed by the hybrid assembly of reads with MIRA software using N. obscura sequence as reference genome. The complete mitogenomes of N. obscura and N. australis are 16,496 and 16,494 bp in size, respectively. Both genomes contain 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes and a control region. Several characteristics of mitochondria typically found in teleost fishes were detected, such as: (i) most genes found in the heavy strand, with the exception of ND6 and eight tRNA genes; (ii) avoidance of G as the third base of codons; (iii) presence of gene overlapping; (iv) percentage of bases usage. We found only eight indels and 197 nucleotide substitutions between these Nannoperca mitogenomes, consistent with a previous hypothesis of recent speciation. The data reported here provide a resource for comparative analysis of recent evolution of mitochondrial genomes.
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