Evidence map›Paper›PMID 21680712›Full record

ArticleMolecular biology of the cell2011

Histone H2B ubiquitylation and H3 lysine 4 methylation prevent ectopic silencing of euchromatic loci important for the cellular response to heat.

Amy Leung, Ivelisse Cajigas, Peilin Jia, Elena Ezhkova, Jason H Brickner, Zhongming Zhao, Fuqiang Geng, William P Tansey

Abstract read
In one paragraph

Article in Molecular biology of the cell, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Antagonistic roles for the ubiquitin ligase Asr1 and the ubiquitin-specific protease Ubp3 in subtelomeric gene silencing.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  7. Review
  8. Article
  9. H3K4 methyltransferase Set1 is involved in maintenance of ergosterol homeostasis and resistance to Brefeldin A.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  10. Ubiquitin and proteasomes in transcription.Annual review of biochemistry · 2012
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Amy LeungWatson School of Biological Sciences, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
Ivelisse Cajigas
Peilin Jia
Elena Ezhkova
Jason H Brickner
Zhongming Zhao
Fuqiang Geng
William P Tansey
Vanderbilt University · USNorthwestern University · USHoward Hughes Medical Institute · US

Funding

Tumor Immunology and Microenvironment Research ProgramP30CA068485 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI MATTHEW J TYSKA · 1995 to 2026
$172.8M
Transcription Control By The Ubiquitin-Proteasome SystemR01GM067728 · NIGMS · VANDERBILT UNIVERSITY · PI TANSEY, WILLIAM PATRICK · 2003 to 2015
$4.6M
Role of DNA localization in regulating transcriptionR01GM080484 · NIGMS · NORTHWESTERN UNIVERSITY · PI BRICKNER, JASON HAYS · 2007 to 2019
$3.6M
NCI NIH HHS P30 CA068485NCI NIH HHS P30CA68485NIGMS NIH HHS GM067728NIGMS NIH HHS GM080484NIGMS NIH HHS R01 GM067728NIGMS NIH HHS R01 GM080484
6 · The paper itself

Abstract

In Saccharomyces cerevisiae, ubiquitylation of histone H2B signals methylation of histone H3 at lysine residues 4 (K4) and 79. These modifications occur at active genes but are believed to stabilize silent chromatin by limiting movement of silencing proteins away from heterochromatin domains. In the course of studying atypical phenotypes associated with loss of H2B ubiquitylation/H3K4 methylation, we discovered that these modifications are also required for cell wall integrity at high temperatures. We identified the silencing protein Sir4 as a dosage suppressor of loss of H2B ubiquitylation, and we showed that elevated Sir4 expression suppresses cell wall integrity defects by inhibiting the function of the Sir silencing complex. Using comparative transcriptome analysis, we identified a set of euchromatic genes-enriched in those required for the cellular response to heat-whose expression is attenuated by loss of H2B ubiquitylation but restored by disruption of Sir function. Finally, using DNA adenine methyltransferase identification, we found that Sir3 and Sir4 associate with genes that are silenced in the absence of H3K4 methylation. Our data reveal that H2B ubiquitylation/H3K4 methylation play an important role in limiting ectopic association of silencing proteins with euchromatic genes important for cell wall integrity and the response to heat.

Indexed as

Cell WallEuchromatinGene Expression Regulation, FungalGene SilencingGenetic LociGenome, FungalHeterochromatinHistonesHot TemperatureLysineMethylationPlasmidsProtein Processing, Post-TranslationalRNA, MessengerSaccharomyces cerevisiaeSequence Analysis, DNAEuchromatinHeterochromatinHistonesLysineRNA, MessengerSilent Information Regulator Proteins, Saccharomyces cerevisiaeSIR3 protein, S cerevisiaeSIR4 protein, S cerevisiaeSite-Specific DNA-Methyltransferase (Adenine-Specific)

Identifiers

PMID21680712
PMCPMC3145549
OpenAlexW2118439749

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.