Evidence map›Paper›PMID 21677858›Full record

ArticleStandards in genomic sciences2011

Complete genome sequence of Oceanithermus profundus type strain (506).

Amrita Pati, Xiaojing Zhang, Alla Lapidus, Matt Nolan, Susan Lucas, Tijana Glavina Del Rio, Hope Tice, Jan-Fang Cheng, Roxane Tapia, Cliff Han and 27 more

Abstract read
In one paragraph

Article in Standards in genomic sciences, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

37 authors.

Amrita Pati
Xiaojing Zhang
Alla Lapidus
Matt Nolan
Susan Lucas
Tijana Glavina Del Rio
Hope Tice
Jan-Fang Cheng
Roxane Tapia
Cliff Han
Lynne Goodwin
Sam Pitluck
Konstantinos Liolios
Ioanna Pagani
Natalia Ivanova
Konstantinos Mavromatis
Amy Chen
Krishna Palaniappan
Loren Hauser
Cynthia D Jeffries
Evelyne-Marie Brambilla
Alina Röhl
Romano Mwirichia
Manfred Rohde
Brian J Tindall
Johannes Sikorski
Reinhard Wirth
Markus Göker
Tanja Woyke
John C Detter
James Bristow
Jonathan A Eisen
Victor Markowitz
Philip Hugenholtz
Nikos C Kyrpides
Hans-Peter Klenk
Miriam Land

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Oceanithermus profundus Miroshnichenko et al. 2003 is the type species of the genus Oceanithermus, which belongs to the family Thermaceae. The genus currently comprises two species whose members are thermophilic and are able to reduce sulfur compounds and nitrite. The organism is adapted to the salinity of sea water, is able to utilize a broad range of carbohydrates, some proteinaceous substrates, organic acids and alcohols. This is the first completed genome sequence of a member of the genus Oceanithermus and the fourth sequence from the family Thermaceae. The 2,439,291 bp long genome with its 2,391 protein-coding and 54 RNA genes consists of one chromosome and a 135,351 bp long plasmid, and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Indexed as

chemolithoheterotrophicGEBAGram-negativehydrothermal ventmicroaerophilicmoderate thermophilicneutrophilicnitrate-reducingnon-motileThermaceae

Identifiers

PMID21677858
PMCPMC3111992

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.