Evidence map›Paper›PMID 21677853›Full record

ArticleStandards in genomic sciences2011

Complete genome sequence of Deinococcus maricopensis type strain (LB-34).

Rüdiger Pukall, Ahmet Zeytun, Susan Lucas, Alla Lapidus, Nancy Hammon, Shweta Deshpande, Matt Nolan, Jan-Fang Cheng, Sam Pitluck, Konstantinos Liolios and 25 more

Open access · goldAbstract read
In one paragraph

Article in Standards in genomic sciences, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 16 citations in OpenAlex.

  1. Thiol Reductases inAntioxidants (Basel, Switzerland) · 2022
    Review
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  3. Article
  4. Predicted Cold Shock Proteins from the Extremophilic BacteriumInternational journal of microbiology · 2017
    Article
  5. Article
  6. Article
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  8. Article
  9. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

35 authors at 6 institutions in 3 countries.

Rüdiger Pukall
Ahmet Zeytun
Susan Lucas
Alla Lapidus
Nancy Hammon
Shweta Deshpande
Matt Nolan
Jan-Fang Cheng
Sam Pitluck
Konstantinos Liolios
Ioanna Pagani
Natalia Mikhailova
Natalia Ivanova
Konstantinos Mavromatis
Amrita Pati
Roxane Tapia
Cliff Han
Lynne Goodwin
Amy Chen
Krishna Palaniappan
Miriam Land
Loren Hauser
Yun-Juan Chang
Cynthia D Jeffries
Evelyne-Marie Brambilla
Manfred Rohde
Markus Göker
J Chris Detter
Tanja Woyke
James Bristow
Jonathan A Eisen
Victor Markowitz
Philip Hugenholtz
Nikos C Kyrpides
Hans-Peter Klenk
Joint Genome Institute · USLawrence Berkeley National Laboratory · USLeibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures · DELos Alamos National Laboratory · USHelmholtz Centre for Infection Research · DELawrence Livermore National Laboratory · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Deinococcus maricopensis (Rainey and da Costa 2005) is a member of the genus Deinococcus, which is comprised of 44 validly named species and is located within the deeply branching bacterial phylum Deinococcus-Thermus. Strain LB-34(T) was isolated from a soil sample from the Sonoran Desert in Arizona. Various species of the genus Deinococcus are characterized by extreme radiation resistance, with D. maricopensis being resistant in excess of 10 kGy. Even though the genomes of three Deinococcus species, D. radiodurans, D. geothermalis and D. deserti, have already been published, no special physiological characteristic is currently known that is unique to this group. It is therefore of special interest to analyze the genomes of additional species of the genus Deinococcus to better understand how these species adapted to gamma- or UV ionizing-radiation. The 3,498,530 bp long genome of D. maricopensis with its 3,301 protein-coding and 66 RNA genes consists of one circular chromosome and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Indexed as

aerobicchemoorganotrophicDeinococcaceaeGEBAGram-positivemesophilicnon-motileradiation-resistant

Identifiers

PMID21677853
PMCPMC3111983
OpenAlexW2152659133

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.