Evidence map›Paper›PMID 21677850›Full record

ArticleStandards in genomic sciences2011

Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6).

Ahmet Zeytun, Johannes Sikorski, Matt Nolan, Alla Lapidus, Susan Lucas, James Han, Hope Tice, Jan-Fang Cheng, Roxanne Tapia, Lynne Goodwin and 27 more

Abstract read
In one paragraph

Article in Standards in genomic sciences, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Resilience of deep aquifer microbial communities to seasonal hydrological fluctuations.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  4. Insights on Microbial Communities Inhabiting Non-Volcanic Hot Springs.International journal of molecular sciences · 2022
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

37 authors.

Ahmet Zeytun
Johannes Sikorski
Matt Nolan
Alla Lapidus
Susan Lucas
James Han
Hope Tice
Jan-Fang Cheng
Roxanne Tapia
Lynne Goodwin
Sam Pitluck
Konstantinos Liolios
Natalia Ivanova
Konstantinos Mavromatis
Natalia Mikhailova
Galina Ovchinnikova
Amrita Pati
Amy Chen
Krishna Palaniappan
Olivier D Ngatchou-Djao
Miriam Land
Loren Hauser
Cynthia D Jeffries
Cliff Han
John C Detter
Susanne Ubler
Manfred Rohde
Brian J Tindall
Markus Göker
Reinhard Wirth
Tanja Woyke
James Bristow
Jonathan A Eisen
Victor Markowitz
Philip Hugenholtz
Hans-Peter Klenk
Nikos C Kyrpides

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hydrogenobacter thermophilus Kawasumi et al. 1984 is the type species of the genus Hydrogenobacter. H. thermophilus was the first obligate autotrophic organism reported among aerobic hydrogen-oxidizing bacteria. Strain TK-6(T) is of interest because of the unusually efficient hydrogen-oxidizing ability of this strain, which results in a faster generation time compared to other autotrophs. It is also able to grow anaerobically using nitrate as an electron acceptor when molecular hydrogen is used as the energy source, and able to aerobically fix CO(2)via the reductive tricarboxylic acid cycle. This is the fifth completed genome sequence in the family Aquificaceae, and the second genome sequence determined from a strain derived from the original isolate. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 1,742,932 bp long genome with its 1,899 protein-coding and 49 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Indexed as

aerobicAquificaceaeAquificaeGEBAGram-negativehydrogen-oxidizingnonmotilenon sporeformingobligately chemolithoautotrophicrod shapedstrictly thermophilic

Identifiers

PMID21677850
PMCPMC3111988

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.