Evidence map›Paper›PMID 21673112›Full record

ArticleThe Journal of biological chemistry2011

Homologous elements hs3a and hs3b in the 3' regulatory region of the murine immunoglobulin heavy chain (Igh) locus are both dispensable for class-switch recombination.

Yi Yan, Joyce Pieretti, Zhongliang Ju, Shiniu Wei, John R Christin, Fatmata Bah, Barbara K Birshtein, Laurel A Eckhardt

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Sequential activation and distinct functions for distal and proximal modules within the IgH 3' regulatory region.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Yi YanDepartment of Biological Sciences, Hunter College, New York, New York 10065, USA.
Joyce Pieretti
Zhongliang Ju
Shiniu Wei
John R Christin
Fatmata Bah
Barbara K Birshtein
Laurel A Eckhardt
Hunter College · USAlbert Einstein College of Medicine · USThe Graduate Center, CUNY · US

Funding

WILD TYPE &MUTANT P53 INTERACTIONS WITH HIV LTR DNAG12RR003037 · NCRR · HUNTER COLLEGE · PI DOTTIN, ROBERT P · 1985 to 2011
$27.6M
Gene Expression in Myeloma CellsR01AI030653 · NIAID · HUNTER COLLEGE · PI ECKHARDT, LAUREL A · 1990 to 2010
$3.4M
CELLULAR AND STRUCTURAL STUDIES OF MYELOMA MUTANTSR01AI013509 · NIAID · YESHIVA UNIVERSITY · PI BIRSHTEIN, BARBARA · 1985 to 2009
$2.9M
CELLULAR AND STRUCTURAL STUDIES OF MYELOMA MUTANTSR37AI013509 · NIAID · YESHIVA UNIVERSITY · PI BIRSHTEIN, BARBARA · 1989 to 1998
–
NCRR NIH HHS G12 RR003037NCRR NIH HHS RR003037NIAID NIH HHS AI13509NIAID NIH HHS AI30653NIAID NIH HHS R01 AI013509NIAID NIH HHS R01 AI030653NIAID NIH HHS R37 AI013509
6 · The paper itself

Abstract

Immunoglobulin heavy chain (IgH) genes are formed, tested, and modified to yield diverse, specific, and high affinity antibody responses to antigen. The processes involved must be regulated, however, to avoid unintended damage to chromosomes. The 3' regulatory region of the Igh locus plays a major role in regulating class-switch recombination (CSR), the process by which antibody effector functions are modified during an immune response. Loss of all known enhancer-like elements in this region dramatically impairs CSR, but individual element deletions have no effect on this process. In the present study, we explored the hypothesis that an underlying functional redundancy in the homologous elements hs3a and hs3b was masking the importance of either element to CSR. Several transgenic mouse lines were generated, each carrying a bacterial artificial chromosome transgene that mimicked Igh locus structure but in which hs3a was missing and hs3b was flanked by loxP sites. Matings to Cyclization Recombination Enzyme-expressing mice established "pairs" of lines that differed only in the presence or absence of hs3b. Remarkably, CSR remained robust in the absence of both hs3a and hs3b, suggesting that the remaining two elements of the 3' regulatory region, hs1.2 and hs4, although individually dispensable for CSR, are, together, sufficient to support CSR.

Indexed as

Recombination, GeneticRegulatory Sequences, Nucleic AcidAllelesAnimalsBase SequenceBlotting, SouthernChromosomes, Artificial, BacterialDNA PrimersEnzyme-Linked Immunosorbent AssayFlow CytometryImmunoglobulin Heavy ChainsImmunoglobulinsMiceMice, TransgenicReverse Transcriptase Polymerase Chain ReactionSequence DeletionDNA PrimersImmunoglobulin Heavy ChainsImmunoglobulins

Identifiers

PMID21673112
PMCPMC3149305
OpenAlexW1995291122

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.