ArticleMolecular biology reports2012
Identification of MicroRNAs and their targets in Helianthus.
Article in Molecular biology reports, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
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Who cites it
23 citing papers in PubMed.
- Bioinformatic prediction, annotation and experimental validation of conserved microRNAs in Lactuca sativa Linn.Scientific reports · 2025Article
- Identification and Characterization of Copper-Responsive miRNAs and Their Target Genes in Jerusalem Artichoke.Plants (Basel, Switzerland) · 2025Article
- Identification and Validation of Functional miRNAs and Their Main Targets in Sorghum bicolor.Molecular biotechnology · 2025Article
- Article
- Predicting candidate miRNAs for targeting begomovirus to induce sequence-specific gene silencing in chilli plants.Frontiers in plant science · 2024Article
- Light-Dependent Regulatory Interactions between the Redox System and miRNAs and Their Biochemical and Physiological Effects in Plants.International journal of molecular sciences · 2023Review
- Identification of miRNA and their target genes inPhysiology and molecular biology of plants : an international journal of functional plant biology · 2022Article
- Sequence, Secondary Structure, and Phylogenetic Conservation of MicroRNAs inBioinformatics and biology insights · 2022Article
- Biosynthesis of Secondary Metabolites Based on the Regulation of MicroRNAs.BioMed research international · 2022Review
- Fe and Zn stress induced gene expression analysis unraveled mechanisms of mineral homeostasis in common bean (Phaseolus vulgaris L.).Scientific reports · 2021Article
- Computational screening of miRNAs and their targets in saffron (Crocus sativus L.) by transcriptome mining.Planta · 2021Article
- New insights into tomato microRNAs.Scientific reports · 2018Article
- Identification and annotation of newly conserved microRNAs and their targets in wheat (Triticum aestivum L.).PloS one · 2018Article
- Aquaculture genomics, genetics and breeding in the United States: current status, challenges, and priorities for future research.BMC genomics · 2017Review
- Poplar trees for phytoremediation of high levels of nitrate and applications in bioenergy.Plant biotechnology journal · 2016Article
- Differential expression of seven conserved microRNAs in response to abiotic stress and their regulatory network in Helianthus annuus.Frontiers in plant science · 2015Article
- Honeysuckle-encoded atypical microRNA2911 directly targets influenza A viruses.Cell research · 2015Article
- Identification and functional analysis of novel and conserved microRNAs in tomato.Molecular biology reports · 2014Article
- Profiling and characterization of eggplant (Solanum melongena L.) microRNAs and their targets.Molecular biology reports · 2014Article
- Identification of candidate genes associated with leaf senescence in cultivated sunflower (Helianthus annuus L.).PloS one · 2014Article
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Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
MicroRNAs (miRNAs) are small non-coding RNAs about 20-24 nucleotides long, playing regulatory role. The conserved nature among the various organisms makes them a good source of new miRNAs discovery by comparative genomics approach using bioinformatic tools. A systematic search approach was used for inter-species homologs of miRNA precursors (pre-miRNAs), from known Helianthus expressed sequence tags (ESTs). The study resulted in 61 novel miRNAs belonging to 34 families from Helianthus ESTs. The 28 miRNA families; mir 159,160, 164, 170, 390, 393, 413, 415, 419, 426, 446, 530, 822, 842, 846, 1310, 1888, 2086, 2657, 2667, 2678, 2659, 2911, 2938, 3440, 3521, 3623, and 3630 are reporting for the first time in Helianthus. In the 61 new miRNAs, 20 are from H. tuberosus, 17 miRNAs belong to H. annus, 8 are from H. ciliaris, 5 to H. exilis, 4 is from H. argophyllous, H. petiolaris each and 3 are from H. paradoxus. All the pre-miRNAs form stable minimum free energy (mfe) stem-loop structure as their orthologues form and the mature miRNAs reside in the stem portion of the stem-loop structures. Their targets consist of growth and development related, transcription factors, signalling pathway kinases, stress resistant proteins and transport related proteins.
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