Evidence map›Paper›PMID 21670587›Full record

ArticleAutophagy2011

Identification and functional analysis of Joka2, a tobacco member of the family of selective autophagy cargo receptors.

Katarzyna Zientara-Rytter, Jolanta Lukomska, Grzegorz Moniuszko, Rafał Gwozdecki, Przemysław Surowiecki, Małgorzata Lewandowska, Frantz Liszewska, Anna Wawrzyńska, Agnieszka Sirko

Open access · hybridAbstract read
In one paragraph

Article in Autophagy, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 81 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
81citing papers in PubMed, 3 pooled it
7.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

81 citing papers in PubMed, 3 syntheses or guidelines pooled it, 142 citations in OpenAlex.

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  14. Autophagy maintains endosperm quality during seed storage to preserve germination ability in Arabidopsis.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  15. Autophagy in plants.Autophagy reports · 2024
    Review
  16. Article
  17. Coronatine-Induced Maize Defense againstJournal of fungi (Basel, Switzerland) · 2023
    Article
  18. Review
  19. Article
  20. A Revised View of theInternational journal of molecular sciences · 2023
    Review

21 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Katarzyna Zientara-RytterInstitute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw, Poland.
Jolanta Lukomska
Grzegorz Moniuszko
Rafał Gwozdecki
Przemysław Surowiecki
Małgorzata Lewandowska
Frantz Liszewska
Anna Wawrzyńska
Agnieszka Sirko
Institute of Biochemistry and Biophysics, Polish Academy of Sciences · PLWako University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Two main mechanisms of protein turnover exist in eukaryotic cells: the ubiquitin-proteasome system and the autophagy-lysosomal pathway. Autophagy is an emerging important constituent of many physiological and pathological processes, such as response to nutrient deficiency, programmed cell death and innate immune response. In mammalian cells the selectivity of autophagy is ensured by the presence of cargo receptors, such as p62/SQSTM1 and NBR1, responsible for sequestration of the ubiquitinated proteins. In plants no selective cargo receptors have been identified yet. The present report indicates that structural and functional homologs of p62 and NBR1 proteins exist in plants. The tobacco protein, named Joka2, has been identified in yeast two-hybrid search as a binding partner of a small coiled-coil protein, a member of UP9/LSU family of unknown function, encoded by the UP9C gene strongly and specifically induced during sulfur deficiency. The typical domains of p62 and NBR1 are conserved in Joka2. Similarly to p62, Joka2-YFP has dual localization (cytosolic speckles and the nucleus); it forms homodimers and interacts with a member of the ATG8 family. Increased expression of Joka2 and ATG8f was observed in roots of tobacco plants grown for two days in nutrient-deficient conditions. Constitutive ectopic expression of Joka2-YFP in tobacco resulted in attenuated response (manifested by lesser yellowing of the leaves) to nutrient deficiency. In conclusion, Joka2, and presumably the process of selective autophagy, might constitute an important part of plant response to environmental stresses.

Indexed as

AutophagyGene Expression Regulation, PlantAdaptor Proteins, Signal TransducingArabidopsis ProteinsAutophagy-Related Protein 8 FamilyCarrier ProteinsCytoplasmEnvironmentHumansMicrofilament ProteinsMicroscopy, FluorescenceNicotianaNitrogenPlant LeavesProtein Structure, TertiaryReceptors, Cytoplasmic and NuclearAdaptor Proteins, Signal TransducingArabidopsis ProteinsAutophagy-Related Protein 8 FamilyCarrier ProteinsGABARAPL2 protein, humanMicrofilament ProteinsNBR1 protein, ArabidopsisNitrogenReceptors, Cytoplasmic and NuclearSequestosome-1 ProteinSQSTM1 protein, humanSulfur

Identifiers

PMID21670587
PMCPMC3242614
OpenAlexW2026753135

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.