ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2011
An EST-SSR linkage map of Raphanus sativus and comparative genomics of the Brassicaceae.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.
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Who cites it
37 citing papers in PubMed.
- HASCH - A high-throughput amplicon-based SNP-platform for medicinal cannabis and industrial hemp genotyping applications.BMC genomics · 2024Article
- Quantitative trait locus (QTL) analysis and fine-mapping forBreeding science · 2023Article
- Development and utility of SSR markers based onFrontiers in plant science · 2023Article
- Genetic and Transcriptome Analysis of Leaf Trichome Development in Chinese Cabbage (International journal of molecular sciences · 2022Article
- Genetic Relationship of Brassicaceae Hybrids with Various Resistance to Blackleg Is Disclosed by the Use of Molecular Markers.Current issues in molecular biology · 2022Article
- QTL mapping for Fusarium wilt resistance based on the whole-genome resequencing and their association with functional genes in Raphanus sativus.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Article
- Genotyping-by-Sequencing-Based Genome-Wide Association Studies of Fusarium Wilt Resistance in Radishes (Genes · 2021Article
- Fine-mapping of a major QTL (Fwr1) for fusarium wilt resistance in radish.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
- Construction of genetic linkage map and identification of a novel major locus for resistance to pine wood nematode in Japanese black pine (Pinus thunbergii).BMC plant biology · 2019Article
- Transcriptome sequencing assisted discovery and computational analysis of novel SNPs associated with flowering inHorticulture research · 2019Article
- The radish genome database (RadishGD): an integrated information resource for radish genomics.Database : the journal of biological databases and curation · 2019Article
- Article
- High-throughput development of simple sequence repeat markers for genetic diversity research in Crambe abyssinica.BMC plant biology · 2016Article
- Characterizing the transcriptome and molecular markers information for roach, Rutilus rutilus.Journal of genetics · 2016Article
- Identification of Flowering-Related Genes Responsible for Differences in Bolting Time between Two Radish Inbred Lines.Frontiers in plant science · 2016Article
- Quantitative Trait Loci for Morphological Traits and their Association with Functional Genes in Raphanus sativus.Frontiers in plant science · 2016Article
- The radish genome and comprehensive gene expression profile of tuberous root formation and development.Scientific reports · 2015Article
- Construction of a reference genetic map of Raphanus sativus based on genotyping by whole-genome resequencing.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2015Article
- In vivo functional analysis of a nuclear restorer PPR protein.BMC plant biology · 2014Article
- Draft sequences of the radish (Raphanus sativus L.) genome.DNA research : an international journal for rapid publication of reports on genes and genomes · 2014Article
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17 authors.
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Abstract
Raphanus sativus (2n = 2x = 18) is a widely cultivated member of the family Brassicaceae, for which genomic resources are available only to a limited extent in comparison to many other members of the family. To promote more genetic and genomic studies and to enhance breeding programmes of R. sativus, we have prepared genetic resources such as complementary DNA libraries, expressed sequences tags (ESTs), simple sequence repeat (SSR) markers and a genetic linkage map. A total of 26 606 ESTs have been collected from seedlings, roots, leaves, and flowers, and clustered into 10 381 unigenes. Similarities were observed between the expression patterns of transcripts from R. sativus and those from representative members of the genera Arabidopsis and Brassica, indicating their functional relatedness. The EST sequence data were used to design 3800 SSR markers and consequently 630 polymorphic SSR loci and 213 reported marker loci have been mapped onto nine linkage groups, covering 1129.2 cM with an average distance of 1.3 cM between loci. Comparison of the mapped EST-SSR marker positions in R. sativus with the genome sequence of A. thaliana indicated that the Brassicaceae members have evolved from a common ancestor. It appears that genomic fragments corresponding to those of A. thaliana have been doubled and tripled in R. sativus. The genetic map developed here is expected to provide a standard map for the genetics, genomics, and molecular breeding of R. sativus as well as of related species. The resources are available at http://marker.kazusa.or.jp/Daikon.
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