Evidence map›Paper›PMID 21669525›Full record

ArticleBioorganic & medicinal chemistry letters2011

Small molecule inhibitors of SHP2 tyrosine phosphatase discovered by virtual screening.

Zhi-Hong Yu, Lan Chen, Li Wu, Sijiu Liu, Lina Wang, Zhong-Yin Zhang

Open access · greenAbstract read
In one paragraph

Article in Bioorganic & medicinal chemistry letters, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 19 citations in OpenAlex.

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  10. DOCK 6: Impact of new features and current docking performance.Journal of computational chemistry · 2015
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Zhi-Hong YuDepartment of Biochemistry and Molecular Biology, Indiana University School of Medicine, 635 Barnhill Drive, Indianapolis, IN 46202, USA.
Lan Chen
Li Wu
Sijiu Liu
Lina Wang
Zhong-Yin Zhang
Indiana University – Purdue University Indianapolis · USIndiana University School of Medicine

Funding

Targeting PRL Phosphatases for Cancer TherapyR01CA126937 · NCI · INDIANA UNIVERSITY INDIANAPOLIS · PI ZHANG, ZHONG-YIN · 2008 to 2012
$1.5M
Small Molecule Inhibitors for the Oncogenic Protein Tyrosine Phosphatase SHP2R01CA152194 · NCI · INDIANA UNIVERSITY INDIANAPOLIS · PI ZHANG, ZHONG-YIN · 2010 to 2014
$1.5M
NCI NIH HHS CA126937NCI NIH HHS CA152194NCI NIH HHS R01 CA126937NCI NIH HHS R01 CA152194
6 · The paper itself

Abstract

SHP2, encoded by PTPN11, is a non-receptor protein tyrosine phosphatase (PTP) containing two tandem Src homology-2 (SH2) domains. It is expressed ubiquitously and plays critical roles in growth factor mediated processes, primarily by promoting the activation of the RAS/ERK signaling pathway. Genetic and biochemical studies have identified SHP2 as the first bona fide oncoprotein in the PTP superfamily, and a promising target for anti-cancer and anti-leukemia therapy. Here, we report a structure-based approach to identify SHP2 inhibitors with a novel scaffold. Through sequential virtual screenings and in vitro inhibition assays, a reversible competitive SHP2 inhibitor (C21) was identified. C21 is structurally distinct from all known SHP2 inhibitors. Combining molecular dynamics simulation and binding free energy calculation, a most likely binding mode of C21 with SHP2 is proposed, and further validated by site-directed mutagenesis and structure-activity relationship studies. This binding mode is consistent with the observed potency and specificity of C21, and reveals the molecular determinants for further optimization based on the new scaffold.

Indexed as

Amino Acid SequenceBenzenesulfonatesBinding SitesDrug Evaluation, PreclinicalEnzyme InhibitorsKineticsMolecular Dynamics SimulationMolecular Sequence DataMutagenesis, Site-DirectedProtein Tyrosine Phosphatase, Non-Receptor Type 11PyrazolesSequence AlignmentSmall Molecule Librariessrc Homology DomainsStructure-Activity RelationshipThermodynamicsBenzenesulfonatesEnzyme InhibitorsProtein Tyrosine Phosphatase, Non-Receptor Type 11PyrazolesSmall Molecule Libraries

Identifiers

PMID21669525
PMCPMC3128679
OpenAlexW2093794491

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.