Evidence map›Paper›PMID 21668738›Full record

ArticleJournal of thrombosis and haemostasis : JTH2011

Use of affinity-directed liquid chromatography-mass spectrometry to map the epitopes of a factor VIII inhibitor antibody fraction.

A E Griffiths, W Wang, F K Hagen, P J Fay

Open access · bronzeAbstract read
In one paragraph

Article in Journal of thrombosis and haemostasis : JTH, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

A E GriffithsDepartment of Biochemistry and Biophysics, University of Rochester School of Medicine, Rochester, NY, USA.
W Wang
F K Hagen
P J Fay
University of Rochester · US

Funding

STRUCTURE AND REGULATION OF HUMAN FACTOR VIIIR01HL038199 · NHLBI · UNIVERSITY OF ROCHESTER · PI WAKABAYASHI, HIRONAO · 1988 to 2013
$4.7M
Factor Vllla interactions in the intrinsic factor XaseR01HL076213 · NHLBI · UNIVERSITY OF ROCHESTER · PI FAY, PHILIP J. · 2004 to 2011
$3.2M
NHLBI NIH HHS HL31899NHLBI NIH HHS HL76213NHLBI NIH HHS R01 HL038199NHLBI NIH HHS R01 HL076213
6 · The paper itself

Abstract

backgroundNeutralizing factor (F) VIII antibodies develop in approximately 30% of individuals with hemophilia A and show specificity to multiple sites in the FVIII protein.

methodsReactive epitopes to an immobilized IgG fraction prepared from a high-titer, FVIII inhibitor plasma were determined after immuno-precipitation (IP) of tryptic and chymotryptic peptides derived from digests of the A1 and A2 subunits of FVIIIa and FVIII light chain. Peptides were detected and identified using highly sensitive liquid chromatography-mass spectrometry (LC-MS).

resultsCoverage maps of the A1 subunit, A2 subunit and light chain represented 79%, 69% and 90%, respectively, of the protein sequences. Dot blots indicated that the inhibitor IgG reacted with epitopes contained within each subunit of FVIIIa. IP coupled with LC-MS identified 19 peptides representing epitopes from all FVIII A and C domains. The majority of peptides (10) were derived from the A2 domain. Three peptides mapped to the C2 domain, while two mapped to the A1 and A3 domains, and single peptides mapped to the a1 segment and C1 domain. Epitopes were typically defined by peptide sequences of < 12 residues.

conclusionsIP coupled with LC-MS identified extensive antibody reactivity at high resolution over the entire functional FVIII molecule and yielded sequence lengths of < 15 residues. A number of the peptides identified mapped to known sequences involved in functionally important protein-protein and protein-membrane interactions.

Indexed as

Chromatography, AffinityChromatography, Reverse-PhaseImmunodominant EpitopesTandem Mass SpectrometryAmino Acid SequenceAntibodies, NeutralizingBinding SitesEpitope MappingFactor VIIIHumansImmunoprecipitationModels, MolecularMolecular Sequence DataPeptide MappingProtein ConformationProtein Interaction Domains and MotifsAntibodies, NeutralizingFactor VIIIImmunodominant Epitopes

Identifiers

PMID21668738
PMCPMC3154976
OpenAlexW2147092608

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.