Evidence map›Paper›PMID 21668652›Full record

ArticleChemical biology & drug design2011

High-throughput analysis of an RNAi library identifies novel kinase targets in Trypanosoma brucei.

Zachary B Mackey, Kyriacos Koupparis, Mari Nishino, James H McKerrow

Abstract read
In one paragraph

Article in Chemical biology & drug design, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 35 citations in OpenAlex.

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  14. Antiparasitic chemotherapy: from genomes to mechanisms.Annual review of pharmacology and toxicology · 2014
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Zachary B MackeyDepartment of Pathology, Sandler Center for Drug Discovery, University of California, San Francisco, CA 94158-2330, USA.
Kyriacos Koupparis
Mari Nishino
James H McKerrow
University of California, San Francisco · US

Funding

Trypanosome Drug Development ConsortiumU01AI075641 · NIAID · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI STUART, KENNETH D · 2007 to 2011
$2.1M
NIAID NIH HHS 5U01AI075641 - 04NIAID NIH HHS U01 AI075641
6 · The paper itself

Abstract

New drugs are needed to treat human African trypanosomiasis because the currently approved treatments are toxic or limited in efficacy. One strategy for developing new drugs involves discovering novel genes whose products can be targeted for modulation by small-molecule chemotherapeutic agents. The Trypanosoma brucei genome contains many genes with the potential to become such targets. Kinases represent one group of genes that regulate many important cell functions and can be modulated by small molecules, thus representing a promising group of enzymes to screen for potential therapeutic targets. RNAi screens could help identify the most promising kinase targets, but the lack of suitable assays represents a barrier for optimizing the use of this technology in T. brucei. Here, we describe an RNAi screen of a small RNAi library targeting 30 members of the T. brucei kinome utilizing a luciferase-based assay. This screen both validated the luciferase-based assay as a suitable method for conducting RNAi screens in T. brucei and also identified two kinases (CRK12 and ERK8) that are essential for normal proliferation by the parasite.

Indexed as

Drug DiscoveryRNA InterferenceAnimalsHumansPhosphotransferasesTrypanosoma brucei bruceiTrypanosomiasis, AfricanPhosphotransferases

Identifiers

PMID21668652
PMCPMC3166884
OpenAlexW1951801924

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.