Evidence map›Paper›PMID 21666675›Full record

ArticleNature structural & molecular biology2011

Recognition of the F&H motif by the Lowe syndrome protein OCRL.

Michelle Pirruccello, Laura E Swan, Ewa Folta-Stogniew, Pietro De Camilli

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.8field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 36 citations in OpenAlex.

  1. Review
  2. A combinedCell cycle (Georgetown, Tex.) · 2022
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  11. Kidney Tubular Ablation ofJournal of the American Society of Nephrology : JASN · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Michelle PirruccelloDepartment of Cell Biology, Yale University School of Medicine, New Haven, Connecticut, USA.
Laura E Swan
Ewa Folta-Stogniew
Pietro De Camilli
Yale University · USHoward Hughes Medical Institute · US

Funding

Yale Diabetes Research CenterP30DK045735 · NIDDK · YALE UNIVERSITY · PI Richard A Flavell · 1993 to 2026
$44.0M
Yale/NIDA Neuroproteomics Research CenterP30DA018343 · NIDA · YALE UNIVERSITY · PI Marina R Picciotto · 2004 to 2026
$37.1M
Molecular Mechanisms in Synaptic Vesicle RecyclingR37NS036251 · NINDS · YALE UNIVERSITY · PI DE CAMILLI, PIETRO · 2010 to 2016
$2.7M
OCRL and the pathogenesis of Lowe Syndrome and Dent DiseaseR01DK082700 · NIDDK · YALE UNIVERSITY · PI DE CAMILLI, PIETRO · 2009 to 2016
$2.4M
Biacore T100 SPR system for studying and characterizing biomolecular interactionS10RR026992 · NCRR · YALE UNIVERSITY · PI FOLTA-STOGNIEW, EWA JOANNA · 2009 to 2009
$364k
Asymmetric flow FFF and Composition Gradient/Light Scattering SystemS10RR023748 · NCRR · YALE UNIVERSITY · PI FOLTA-STOGNIEW, EWA JOANNA · 2007 to 2007
$271k
NCRR NIH HHS 1S10RR023748NCRR NIH HHS 1S10RR026992NCRR NIH HHS S10 RR023748NCRR NIH HHS S10 RR026992NIDA NIH HHS DA018343NIDA NIH HHS P30 DA018343NIDDK NIH HHS DK082700NIDDK NIH HHS DK45735NIDDK NIH HHS P30 DK045735NIDDK NIH HHS R01 DK082700NINDS NIH HHS R37 NS036251
6 · The paper itself

Abstract

Lowe syndrome and type 2 Dent disease are caused by defects in the inositol 5-phosphatase OCRL. Most missense mutations in the OCRL ASH-RhoGAP domain that are found in affected individuals abolish interactions with the endocytic adaptors APPL1 and Ses (both Ses1 and Ses2), which bind OCRL through a short phenylalanine and histidine (F&H) motif. Using X-ray crystallography, we have identified the F&H motif binding site on the RhoGAP domain of OCRL. Missense mutations associated with disease affected F&H binding indirectly by destabilizing the RhoGAP fold. By contrast, a disease-associated mutation that does not perturb F&H binding and ASH-RhoGAP stability disrupted the interaction of OCRL with Rab5. The F&H binding site of OCRL is conserved even in species that do not have an identified homolog for APPL or Ses. Our study predicts the existence of other OCRL binding partners and shows that the perturbation of OCRL interactions has a crucial role in disease.

Indexed as

Amino Acid MotifsAmino Acid SequenceBinding SitesConserved SequenceCrystallography, X-RayHumansMolecular Sequence DataMutation, MissenseOculocerebrorenal SyndromePhosphoric Monoester HydrolasesProtein Foldingrab5 GTP-Binding ProteinsSequence AlignmentOCRL protein, humanPhosphoric Monoester Hydrolasesrab5 GTP-Binding Proteins

Identifiers

PMID21666675
PMCPMC3130824
OpenAlexW2060705787

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.