Evidence map›Paper›PMID 21665990›Full record

SynthesisHuman molecular genetics2011

Common variants near FRK/COL10A1 and VEGFA are associated with advanced age-related macular degeneration.

Yi Yu, Tushar R Bhangale, Jesen Fagerness, Stephan Ripke, Gudmar Thorleifsson, Perciliz L Tan, Eric H Souied, Andrea J Richardson, Joanna E Merriam, Gabriëlle H S Buitendijk and 35 more

Open access · hybridAbstract readMeta-Analysis
In one paragraph

Synthesis in Human molecular genetics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 151 papers, 9 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
151citing papers in PubMed, 9 pooled it
29.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

151 citing papers in PubMed, 9 syntheses or guidelines pooled it, 255 citations in OpenAlex.

  1. Pooled it
  2. ABCA1 rs1883025 polymorphism and risk of age-related macular degeneration.Graefe's archive for clinical and experimental ophthalmology = Albrecht von Graefes Archiv fur klinische und experimentelle Ophthalmologie · 2016
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91 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

45 authors at 16 institutions in 9 countries.

Yi YuOphthalmic Epidemiology and Genetics Service, New England Eye Center, Tufts Medical Center, Tufts University School of Medicine, 800 WashingtonStreet, No. 450, Boston, MA 02111, USA.
Tushar R Bhangale
Jesen Fagerness
Stephan Ripke
Gudmar Thorleifsson
Perciliz L Tan
Eric H Souied
Andrea J Richardson
Joanna E Merriam
Gabriëlle H S Buitendijk
Robyn Reynolds
Soumya Raychaudhuri
Kimberly A Chin
Lucia Sobrin
Evangelos Evangelou
Phil H Lee
Aaron Y Lee
Nicolas Leveziel
Donald J Zack
Betsy Campochiaro
Peter Campochiaro
R Theodore Smith
Gaetano R Barile
Robyn H Guymer
Ruth Hogg
Usha Chakravarthy
Luba D Robman
Omar Gustafsson
Haraldur Sigurdsson
Ward Ortmann
Timothy W Behrens
Kari Stefansson
André G Uitterlinden
Cornelia M van Duijn
Johannes R Vingerling
Caroline C W Klaver
Rando Allikmets
Milam A Brantley
Paul N Baird
Nicholas Katsanis
Unnur Thorsteinsdottir
John P A Ioannidis
Mark J Daly
Robert R Graham
Johanna M Seddon
Broad Institute · USColumbia University · USdeCODE Genetics (Iceland) · ISThe University of Melbourne · AUTufts University · USDuke University · USEye Center · SAQueen's University Belfast · GBRetina Institute · USUniversité Paris-Est Créteil · FRErasmus MC · NLInstitut de la Vision · FRJohns Hopkins University · USMassachusetts Eye and Ear Infirmary · USUniversity of Iceland · ISUniversity of Ioannina · GR

Funding

Wilmer Core Grant for Vision ResearchP30EY001765 · NEI · JOHNS HOPKINS UNIVERSITY · PI JEFFREY MUMM · 1985 to 2026
$22.1M
Development of Complement Modulating Therapeutics for AMDR24EY017404 · NEI · UNIVERSITY OF UTAH · PI HAGEMAN, GREGORY S · 2006 to 2010
$14.8M
Mass Eye and Ear-Vision Clinical Scientist Development ProgramK12EY016335 · NEI · MASSACHUSETTS EYE AND EAR INFIRMARY · PI Reza Dana · 2004 to 2026
$12.3M
ETIOLOGIC STUDIES OF AGE-RELATED MACULAR DEGENERATIONR01EY011309 · NEI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI SEDDON, JOHANNA M · 2003 to 2017
$9.3M
MOLECULAR GENETICS OF SCHIZOPHRENIAR01MH059571 · NIMH · UNIVERSITY OF CHICAGO · PI GEJMAN, PABLO V. · 1999 to 2007
$8.0M
Genetic Variation in Age-Related Macular DegenerationR01EY013435 · NEI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ALLIKMETS, RANDO L · 2001 to 2014
$7.7M
A Genome-Wide Association Study of SchizophreniaU01MH079469 · NIMH · NORTHSHORE UNIVERSITY HEALTHSYSTEM · PI GEJMAN, PABLO V. · 2007 to 2009
$4.4M
MOLECULAR GENETICS OF SCHIZOPHRENIAR01MH060879 · NIMH · WASHINGTON UNIVERSITY · PI CLONINGER, C. ROBERT · 1999 to 2006
$2.7M
MOLECULAR GENETICS OF SCHIZOPHRENIAR01MH059586 · NIMH · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI SILVERMAN, JEREMY M. · 1999 to 2006
$1.9M
MOLECULAR GENETICS OF SCHIZOPHRENIAR01MH061675 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI LEVINSON, DOUGLAS FREDERICK · 1999 to 2007
$1.8M
MOLECULAR GENETICS OF SCHIZOPHRENIAR01MH059587 · NIMH · EMORY UNIVERSITY · PI AMIN, FAROOQ · 1999 to 2006
$1.8M
MOLECULAR GENETICS OF SCHIZOPHRENIAR01MH059565 · NIMH · UNIVERSITY OF COLORADO DENVER · PI FREEDMAN, ROBERT · 1999 to 2006
$1.7M
NEI NIH HHS K12 EY016335NEI NIH HHS K12-EY16335NEI NIH HHS P30 EY001765NEI NIH HHS P30-EY001765NEI NIH HHS R01 EY011309NEI NIH HHS R01 EY013435NEI NIH HHS R01-EY11309NEI NIH HHS R01-EY13435NEI NIH HHS R24 EY017404NEI NIH HHS R24-EY017404NIAMS NIH HHS K08 AR055688NIMH NIH HHS R01 MH059565NIMH NIH HHS R01 MH059566NIMH NIH HHS R01 MH059571NIMH NIH HHS R01 MH059586NIMH NIH HHS R01 MH059587NIMH NIH HHS R01 MH059588NIMH NIH HHS R01 MH060870NIMH NIH HHS R01 MH060879NIMH NIH HHS R01 MH061675NIMH NIH HHS R01 MH067257NIMH NIH HHS R01 MH081800NIMH NIH HHS U01 MH046276NIMH NIH HHS U01 MH046318NIMH NIH HHS U01 MH079469NIMH NIH HHS U01 MH079470
6 · The paper itself

Abstract

Despite significant progress in the identification of genetic loci for age-related macular degeneration (AMD), not all of the heritability has been explained. To identify variants which contribute to the remaining genetic susceptibility, we performed the largest meta-analysis of genome-wide association studies to date for advanced AMD. We imputed 6 036 699 single-nucleotide polymorphisms with the 1000 Genomes Project reference genotypes on 2594 cases and 4134 controls with follow-up replication of top signals in 5640 cases and 52 174 controls. We identified two new common susceptibility alleles, rs1999930 on 6q21-q22.3 near FRK/COL10A1 [odds ratio (OR) 0.87; P = 1.1 × 10(-8)] and rs4711751 on 6p12 near VEGFA (OR 1.15; P = 8.7 × 10(-9)). In addition to the two novel loci, 10 previously reported loci in ARMS2/HTRA1 (rs10490924), CFH (rs1061170, and rs1410996), CFB (rs641153), C3 (rs2230199), C2 (rs9332739), CFI (rs10033900), LIPC (rs10468017), TIMP3 (rs9621532) and CETP (rs3764261) were confirmed with genome-wide significant signals in this large study. Loci in the recently reported genes ABCA1 and COL8A1 were also detected with suggestive evidence of association with advanced AMD. The novel variants identified in this study suggest that angiogenesis (VEGFA) and extracellular collagen matrix (FRK/COL10A1) pathways contribute to the development of advanced AMD.

Indexed as

Genetic VariationGenome-Wide Association StudyCase-Control StudiesCohort StudiesCollagen Type XFemaleGenotypeHumansMacular DegenerationMaleNeoplasm ProteinsPolymorphism, Single NucleotideProtein-Tyrosine KinasesVascular Endothelial Growth Factor AWhite PeopleCollagen Type XFRK protein, humanNeoplasm ProteinsProtein-Tyrosine KinasesVascular Endothelial Growth Factor AVEGFA protein, human

Identifiers

PMID21665990
PMCPMC3159552
OpenAlexW2099989980

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.