Evidence map›Paper›PMID 21665945›Full record

ArticleThe Journal of biological chemistry2011

Ubp15p, a ubiquitin hydrolase associated with the peroxisomal export machinery.

Mykhaylo O Debelyy, Harald W Platta, Delia Saffian, Astrid Hensel, Sven Thoms, Helmut E Meyer, Bettina Warscheid, Wolfgang Girzalsky, Ralf Erdmann

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 104 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Thioester and Oxyester Linkages in the Ubiquitin System.Methods in molecular biology (Clifton, N.J.) · 2023
    Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Non-lysine ubiquitylation: Doing things differently.Frontiers in molecular biosciences · 2022
    Review
  13. Review
  14. Review
  15. Article
  16. Review
  17. Peroxisome: Metabolic Functions and Biogenesis.Advances in experimental medicine and biology · 2020
    Review
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Mykhaylo O DebelyyAbteilung für Systembiochemie, Medizinische Fakultät der Ruhr-Universität Bochum, Bochum, Germany.
Harald W Platta
Delia Saffian
Astrid Hensel
Sven Thoms
Helmut E Meyer
Bettina Warscheid
Wolfgang Girzalsky
Ralf Erdmann
Ruhr University Bochum · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Peroxisomal matrix protein import is facilitated by cycling receptors shuttling between the cytosol and the peroxisomal membrane. One crucial step in this cycle is the ATP-dependent release of the receptors from the peroxisomal membrane. This step is facilitated by the peroxisomal AAA (ATPases associated with various cellular activities) proteins Pex1p and Pex6p with ubiquitination of the receptor being the main signal for its export. Here we report that the AAA complex contains dislocase as well as deubiquitinating activity. Ubp15p, a ubiquitin hydrolase, was identified as a novel constituent of the complex. Ubp15p partially localizes to peroxisomes and is capable of cleaving off ubiquitin moieties from the type I peroxisomal targeting sequence (PTS1) receptor Pex5p. Furthermore, Ubp15p-deficient cells are characterized by a stress-related PTS1 import defect. The results merge into a picture in which removal of ubiquitin from the PTS1 receptor Pex5p is a specific event and might represent a vital step in receptor recycling.

Indexed as

Adenosine TriphosphatasesATPases Associated with Diverse Cellular ActivitiesEndopeptidasesMembrane ProteinsPeroxisomesProtein TransportSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsUbiquitinAdenosine TriphosphatasesATPases Associated with Diverse Cellular ActivitiesEndopeptidasesMembrane ProteinsPEX1 protein, S cerevisiaePEX6 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsUbiquitinUbp15 protein, S cerevisiae

Identifiers

PMID21665945
PMCPMC3151067
OpenAlexW2118223704

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.