Evidence map›Paper›PMID 21664637›Full record

ArticleVirology2011

Long-distance kissing loop interactions between a 3' proximal Y-shaped structure and apical loops of 5' hairpins enhance translation of Saguaro cactus virus.

Maitreyi Chattopadhyay, Kerong Shi, Xuefeng Yuan, Anne E Simon

Open access · greenAbstract read
In one paragraph

Article in Virology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
6.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
  2. Review
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  4. Review
  5. Structure of saguaro cactus virus 3' translational enhancer mimics 5' cap for eIF4E binding.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
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  8. Article
  9. Review
  10. Journal of virology · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Maitreyi ChattopadhyayDepartment of Cell Biology and Molecular Genetics, University of Maryland College Park, College Park, MD 20742, USA.
Kerong Shi
Xuefeng Yuan
Anne E Simon
University of Maryland, College Park · US

Funding

Role of RNA Structural Switches in the Replication of a (+)-Strand RNA VirusR01GM061515 · NIGMS · UNIV OF MARYLAND, COLLEGE PARK · PI SIMON, ANNE ELIZABETH · 2002 to 2010
$2.4M
Mechanisms of Virus Replication and Gene ExpressionT32AI051967 · NIAID · UNIV OF MARYLAND, COLLEGE PARK · PI SIMON, ANNE ELIZABETH · 2002 to 2013
$1.8M
NIAID NIH HHS 2T32AI051967-06A1NIAID NIH HHS T32 AI051967NIGMS NIH HHS R01 GM061515ODCDC CDC HHS GM 061515-05A2/G120CD
6 · The paper itself

Abstract

Circularization of cellular mRNAs is a key event prior to translation initiation. We report that efficient translation of Saguaro cactus virus (SCV) requires a 3' translational enhancer (PTE) located partially in coding sequences. Unlike a similar PTE reported in the 3' UTR of Pea enation mosaic virus that does not engage in an RNA:RNA interaction (Wang Z. et al., J. Biol. Chem. 284, 14189-14202, 2009), the SCV PTE participates in long distance RNA:RNA interactions with hairpins located in the p26 ORF and in the 5' UTR of one subgenomic RNA. At least two additional RNA:RNA interactions are also present, one of which involves the p26 initiation codon. Similar PTE can be found in six additional carmoviruses that can putatively form long-distance interactions with 5' hairpins located in comparable positions.

Indexed as

3' Untranslated Regions5' Untranslated RegionsBase SequenceCactaceaeCarmovirusEnhancer Elements, GeneticGenes, ReporterMolecular Sequence DataNucleic Acid ConformationProtein BiosynthesisRNA, MessengerRNA, Viral3' Untranslated Regions5' Untranslated RegionsRNA, MessengerRNA, Viral

Identifiers

PMID21664637
PMCPMC3152624
OpenAlexW2072920488

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.