Evidence map›Paper›PMID 21660710›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2011

Supported lipid bilayers and DNA curtains for high-throughput single-molecule studies.

Ilya J Finkelstein, Eric C Greene

Abstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Biochemistry: one molecule at a time.Essays in biochemistry · 2021
    Article
  5. DNA Manipulation and Single-Molecule Imaging.Molecules (Basel, Switzerland) · 2021
    Review
  6. Article
  7. Assembling the Human Resectosome on DNA Curtains.Methods in molecular biology (Clifton, N.J.) · 2019
    Article
  8. Article
  9. Article
  10. Article
  11. Single-molecule imaging reveals the mechanism of Exo1 regulation by single-stranded DNA binding proteins.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  12. High-Throughput Universal DNA Curtain Arrays for Single-Molecule Fluorescence Imaging.Langmuir : the ACS journal of surfaces and colloids · 2015
    Article
  13. Review
  14. Review
  15. Article
  16. Surface passivation for single-molecule protein studies.Journal of visualized experiments : JoVE · 2014
    Article
  17. Review
  18. Towards physiological complexity with in vitro single-molecule biophysics.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2013
    Review
  19. Molecular traffic jams on DNA.Annual review of biophysics · 2013
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Ilya J FinkelsteinDepartment of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032, USA. ifinkelstein@columbia.edu
Eric C Greene

Funding

Single Molecule Studies of DNA Error Recognition by Mismatch Repair EnzymesF32GM080864 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI FINKELSTEIN, ILYA J · 2007 to 2009
$142k
Mechanisms of chromatin remodeling and roadblock clearance by DNA motor proteinsK99GM097177 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI FINKELSTEIN, ILYA J · 2011 to 2012
$114k
Howard Hughes Medical InstituteNIGMS NIH HHS F32 GM080864NIGMS NIH HHS F32GM80864NIGMS NIH HHS K99 GM097177
6 · The paper itself

Abstract

Single-molecule studies of protein-DNA interactions continue to yield new information on numerous DNA processing pathways. For example, optical microscopy-based techniques permit the real-time observation of proteins that interact with DNA substrates, which in turn allows direct insight into reaction mechanisms. However, these experiments remain technically challenging and are limited by the paucity of stable chromophores and the difficulty of acquiring statistically significant observations. In this protocol, we describe a novel, high-throughput, nanofabricated experimental platform enabling real-time imaging of hundreds of individual protein-DNA complexes over hour timescales.

Indexed as

DNALipid BilayersNucleosomesSoftwareDNALipid BilayersNucleosomes

Identifiers

PMID21660710
PMCPMC3319767

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.