Evidence map›Paper›PMID 21660298›Full record

ArticleInternational journal of chronic obstructive pulmonary disease2011

Oxidative DNA damage in lung tissue from patients with COPD is clustered in functionally significant sequences.

Viktor M Pastukh, Li Zhang, Mykhaylo V Ruchko, Olena Gorodnya, Gina C Bardwell, Rubin M Tuder, Mark N Gillespie

Open access · goldAbstract readMulticenter Study
In one paragraph

Article in International journal of chronic obstructive pulmonary disease, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 57 citations in OpenAlex.

  1. Trial
  2. Review
  3. Review
  4. Article
  5. Implications of DNA damage in chronic lung disease.Frontiers in cell and developmental biology · 2024
    Review
  6. Role of autophagy in lung diseases and ageing.European respiratory review : an official journal of the European Respiratory Society · 2022
    Review
  7. Article
  8. The cGAS-STING pathway: The role of self-DNA sensing in inflammatory lung disease.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2020
    Review
  9. Article
  10. Review
  11. The DNA repair transcriptome in severe COPD.The European respiratory journal · 2018
    Article
  12. Review
  13. Review
  14. Article
  15. Review
  16. Is mitochondrial dysfunction a driving mechanism linking COPD to nonsmall cell lung carcinoma?European respiratory review : an official journal of the European Respiratory Society · 2017
    Review
  17. Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Viktor M PastukhDepartment of Pharmacology and Center for Lung Biology, University of South Alabama College of Medicine, Mobile, AL 36688, USA.
Li Zhang
Mykhaylo V Ruchko
Olena Gorodnya
Gina C Bardwell
Rubin M Tuder
Mark N Gillespie
University of South Alabama · USUniversity of Colorado Denver · US

Funding

T-type Calcium Channels and von Willebrand Factor ReleaseP01HL066299 · NHLBI · UNIVERSITY OF SOUTH ALABAMA · PI ALVAREZ, DIEGO F. · 2001 to 2022
$34.6M
DNA LESIONS AND GENE EXPRESSION IN HYPOXIC LUNG DISEASER01HL058234 · NHLBI · UNIVERSITY OF SOUTH ALABAMA · PI GILLESPIE, MARK N · 1998 to 2018
$5.2M
MtDNA repair: An isolated pharmacologic target in acute lung injuryR01HL113614 · NHLBI · UNIVERSITY OF SOUTH ALABAMA · PI GILLESPIE, MARK N · 2012 to 2021
$3.5M
Endothelial Cell Death in EmphysemaR01HL066554 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI TUDER, RUBIN M · 2000 to 2007
$2.6M
Lung Cell Genomic Threats from Physiological SignalsR01HL073244 · NHLBI · UNIVERSITY OF SOUTH ALABAMA · PI GILLESPIE, MARK N · 2005 to 2009
$1.8M
RTP-801 in Cigarette Smoke-EmphysemaR01ES016285 · NIEHS · UNIVERSITY OF COLORADO DENVER · PI TUDER, RUBIN M. · 2011 to 2015
$1.6M
NHLBI NIH HHS HL058234NHLBI NIH HHS HL066554NHLBI NIH HHS HL073244NHLBI NIH HHS HL084521NHLBI NIH HHS P01 HL066299NHLBI NIH HHS P01 HL085609NHLBI NIH HHS P01 HL66299NHLBI NIH HHS R01 HL058234NHLBI NIH HHS R01 HL066554NHLBI NIH HHS R01 HL073244NHLBI NIH HHS R01 HL113614NIEHS NIH HHS R01 ES016285
6 · The paper itself

Abstract

Lung tissue from COPD patients displays oxidative DNA damage. The present study determined whether oxidative DNA damage was randomly distributed or whether it was localized in specific sequences in either the nuclear or mitochondrial genomes. The DNA damage-specific histone, gamma-H2AX, was detected immunohistochemically in alveolar wall cells in lung tissue from COPD patients but not control subjects. A PCR-based method was used to search for oxidized purine base products in selected 200 bp sequences in promoters and coding regions of the VEGF, TGF-β1, HO-1, Egr1, and β-actin genes while quantitative Southern blot analysis was used to detect oxidative damage to the mitochondrial genome in lung tissue from control subjects and COPD patients. Among the nuclear genes examined, oxidative damage was detected in only 1 sequence in lung tissue from COPD patients: the hypoxic response element (HRE) of the VEGF promoter. The content of VEGF mRNA also was reduced in COPD lung tissue. Mitochondrial DNA content was unaltered in COPD lung tissue, but there was a substantial increase in mitochondrial DNA strand breaks and/or abasic sites. These findings show that oxidative DNA damage in COPD lungs is prominent in the HRE of the VEGF promoter and in the mitochondrial genome and raise the intriguing possibility that genome and sequence-specific oxidative DNA damage could contribute to transcriptional dysregulation and cell fate decisions in COPD.

Indexed as

DNA DamageOxidative StressAnalysis of VarianceBaltimoreBlotting, SouthernCase-Control StudiesColoradoDNA, MitochondrialHistonesHumansImmunohistochemistryLungPolymerase Chain ReactionPromoter Regions, GeneticPulmonary Disease, Chronic ObstructiveRNA, MessengerDNA, MitochondrialH2AX protein, humanHistonesRNA, MessengerVascular Endothelial Growth Factor AVEGFA protein, humanCOPDDNA damagemtDNAVEGF hypoxic response element

Identifiers

PMID21660298
PMCPMC3107697
OpenAlexW1998785280

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.