Evidence map›Paper›PMID 21656570›Full record

ArticleProteins2011

Trifluoperazine regulation of calmodulin binding to Fas: a computational study.

Di Pan, Qi Yan, Yabing Chen, Jay M McDonald, Yuhua Song

Abstract read
In one paragraph

Article in Proteins, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Di PanDepartment of Biomedical Engineering, The University of Alabama at Birmingham, Birmingham, Alabama 35294, USA.
Qi Yan
Yabing Chen
Jay M McDonald
Yuhua Song
University of Alabama at Birmingham · US

Funding

Protein interactions underlying Fas-mediated DISC in CholangiocarcinomaK25CA140791 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI SONG, YUHUA · 2009 to 2013
$769k
NCI NIH HHS 5K25CA140791NCI NIH HHS K25 CA140791
6 · The paper itself

Abstract

Death-inducing signaling complex (DISC) formation is a critical step in Fas-mediated signaling for apoptosis. Previous experiments have demonstrated that the calmodulin (CaM) antagonist, trifluoperazine (TFP) regulates CaM-Fas binding and affects Fas-mediated DISC formation. In this study, we investigated the anti-cooperative characteristics of TFP binding to CaM and the effect of TFP on the CaM-Fas interaction from both structural and thermodynamic perspectives using combined molecular dynamics simulations and binding free energy analyses. We studied the interactions of different numbers of TFP molecules with CaM and explored the effects of the resulting conformational changes in CaM on CaM-Fas binding. Results from these analyses showed that the number of TFP molecules bound to CaM directly influenced α-helix formation and hydrogen bond occupancy within the α-helices of CaM, contributing to the conformational and motion changes in CaM. These changes affected CaM binding to Fas, resulting in secondary structural changes in Fas and conformational and motion changes of Fas in CaM-Fas complexes, potentially perturbing the recruitment of Fas-associated death domain for DISC formation. The computational results from this study reveal the structural and molecular mechanisms that underlie the role of the CaM antagonist, TFP, in regulation of CaM-Fas binding and Fas-mediated DISC formation in a concentration-dependent manner.

Indexed as

AnimalsCalmodulinComputational Biologyfas ReceptorHumansMiceModels, MolecularMolecular Dynamics SimulationProtein BindingProtein Structure, SecondaryThermodynamicsTrifluoperazineCalmodulinfas ReceptorTrifluoperazine

Identifiers

PMID21656570
PMCPMC3132223
OpenAlexW2034335417

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.