Evidence map›Paper›PMID 21655290›Full record

ArticlePloS one2011

CovR-controlled global regulation of gene expression in Streptococcus mutans.

Alexander Dmitriev, Saswat S Mohapatra, Patrick Chong, Melody Neely, Saswati Biswas, Indranil Biswas

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 60 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Alexander DmitrievDepartment of Microbiology, Molecular Genetics and Immunology, University of Kansas Medical Center, Kansas City, Kansas, United States of America.
Saswat S Mohapatra
Patrick Chong
Melody Neely
Saswati Biswas
Indranil Biswas
University of Kansas Medical Center · USInstitute of Experimental Medicine · RUMichigan United · US

Funding

Mechanisms of Virulence Gene Regulation in Streptococcus mutansR01DE016686 · NIDCR · UNIVERSITY OF SOUTH DAKOTA · PI BISWAS, INDRANIL · 2007 to 2011
$1.2M
NIDCR NIH HHS DE016686NIDCR NIH HHS R01 DE016686
6 · The paper itself

Abstract

CovR/S is a two-component signal transduction system (TCS) that controls the expression of various virulence related genes in many streptococci. However, in the dental pathogen Streptococcus mutans, the response regulator CovR appears to be an orphan since the cognate sensor kinase CovS is absent. In this study, we explored the global transcriptional regulation by CovR in S. mutans. Comparison of the transcriptome profiles of the wild-type strain UA159 with its isogenic covR deleted strain IBS10 indicated that at least 128 genes (∼6.5% of the genome) were differentially regulated. Among these genes, 69 were down regulated, while 59 were up regulated in the IBS10 strain. The S. mutans CovR regulon included competence genes, virulence related genes, and genes encoded within two genomic islands (GI). Genes encoded by the GI TnSmu2 were found to be dramatically reduced in IBS10, while genes encoded by the GI TnSmu1 were up regulated in the mutant. The microarray data were further confirmed by real-time RT-PCR analyses. Furthermore, direct regulation of some of the differentially expressed genes was demonstrated by electrophoretic mobility shift assays using purified CovR protein. A proteomic study was also carried out that showed a general perturbation of protein expression in the mutant strain. Our results indicate that CovR truly plays a significant role in the regulation of several virulence related traits in this pathogenic streptococcus.

Indexed as

Bacterial ProteinsElectrophoresis, Gel, Two-DimensionalElectrophoretic Mobility Shift AssayGene Expression Regulation, BacterialOligonucleotide Array Sequence AnalysisRegulonRepressor ProteinsReverse Transcriptase Polymerase Chain ReactionStreptococcus mutansBacterial ProteinsRepressor Proteins

Identifiers

PMID21655290
PMCPMC3105014
OpenAlexW1986961806

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.