Evidence map›Paper›PMID 21653779›Full record

ArticleJournal of clinical microbiology2011

Amyloid histology stain for rapid bacterial endospore imaging.

Bing Xia, Srigokul Upadhyayula, Vicente Nuñez, Pavel Landsman, Samuel Lam, Harbani Malik, Sharad Gupta, Mohammad Sarshar, Jingqiu Hu, Bahman Anvari and 2 more

Open access · greenAbstract read
In one paragraph

Article in Journal of clinical microbiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Bis-GO@SiOFrontiers in chemistry · 2026
    Article
  3. Article
  4. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Bing XiaDepartment of Bioengineering, University of California, Riverside, 900 University Avenue, Riverside, CA 92521, USA.
Srigokul Upadhyayula
Vicente Nuñez
Pavel Landsman
Samuel Lam
Harbani Malik
Sharad Gupta
Mohammad Sarshar
Jingqiu Hu
Bahman Anvari
Guilford Jones
Valentine I Vullev
University of California, Riverside · USBoston University · US

Funding

MECHANICS OF THE COCHLEAR OUTER HAIR CELLR01DC002775 · NIDCD · BAYLOR COLLEGE OF MEDICINE · PI BROWNELL, WILLIAM E · 1996 to 2011
$5.6M
NIDCD NIH HHS 2R01-DC02775-06NIDCD NIH HHS R01 DC002775
6 · The paper itself

Abstract

Bacterial endospores are some of the most resilient forms of life known to us, with their persistent survival capability resulting from a complex and effective structural organization. The outer membrane of endospores is surrounded by the densely packed endospore coat and exosporium, containing amyloid or amyloid-like proteins. In fact, it is the impenetrable composition of the endospore coat and the exosporium that makes staining methodologies for endospore detection complex and challenging. Therefore, a plausible strategy for facile and expedient staining would be to target components of the protective surface layers of the endospores. Instead of targeting endogenous markers encapsulated in the spores, here we demonstrated staining of these dormant life entities that targets the amyloid domains, i.e., the very surface components that make the coats of these species impenetrable. Using an amyloid staining dye, thioflavin T (ThT), we examined this strategy. A short incubation of bacillus endospore suspensions with ThT, under ambient conditions, resulted in (i) an enhancement of the fluorescence of ThT and (ii) the accumulation of ThT in the endospores, affording fluorescence images with excellent contrast ratios. Fluorescence images revealed that ThT tends to accumulate in the surface regions of the endospores. The observed fluorescence enhancement and dye accumulation, coupled with the sensitivity of emission techniques, provide an effective and rapid means of staining endospores without the inconvenience of pre- or posttreatment of samples.

Indexed as

BacillusBacterial ProteinsBacteriological TechniquesBenzothiazolesGeobacillus stearothermophilusImage Processing, Computer-AssistedMicroscopy, FluorescenceSpores, BacterialStaining and LabelingThiazolesBacterial ProteinsBenzothiazolesThiazolesthioflavin T

Identifiers

PMID21653779
PMCPMC3147746
OpenAlexW2114573404

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.