Evidence map›Paper›PMID 21653726›Full record

ArticleJournal of neurophysiology2011

Development of new peptide-based tools for studying synaptic ribbon function.

Adam A Francis, Bhupesh Mehta, David Zenisek

Open access · greenAbstract readComparative Study
In one paragraph

Article in Journal of neurophysiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Article
  3. Role of Ribeye PXDLS/T-binding cleft in normal synaptic ribbon function.bioRxiv : the preprint server for biology · 2023
    Article
  4. Article
  5. Phase-Locking Requires Efficient CaThe Journal of neuroscience : the official journal of the Society for Neuroscience · 2021
    Article
  6. Article
  7. Compartmentalization of antagonistic CaProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  8. Quantitative optical nanophysiology of CaNature communications · 2018
    Article
  9. Article
  10. RIM-Binding Protein 2 Promotes a Large Number of CaFrontiers in cellular neuroscience · 2017
    Article
  11. Article
  12. Article
  13. Rab3-interacting molecules 2α and 2β promote the abundance of voltage-gated CaV1.3 Ca2+ channels at hair cell active zones.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  14. ATP hydrolysis is critically required for function of CaV1.3 channels in cochlear inner hair cells via fueling Ca2+ clearance.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2014
    Article
  15. Article
  16. Modes and regulation of endocytic membrane retrieval in mouse auditory hair cells.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2014
    Article
  17. Concurrent maturation of inner hair cell synaptic Ca2+ influx and auditory nerve spontaneous activity around hearing onset in mice.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2013
    Article
  18. Patch-clamp recordings from lateral line neuromast hair cells of the living zebrafish.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2013
    Article
  19. Properties of ribbon and non-ribbon release from rod photoreceptors revealed by visualizing individual synaptic vesicles.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Adam A FrancisDepartment of Cellular and Molecular Physiology, Ophthalmology and Visual Sciences and the Center for Cellular Neuroscience, Neurodegeneration and Repair, Yale University School of Medicine, New Haven, CT 06520, USA.
Bhupesh Mehta
David Zenisek
Yale University · US

Funding

Yale Core Grant For Vision ResearchP30EY000785 · NEI · YALE UNIVERSITY · PI TIAN, NING · 1985 to 2010
$5.8M
Retinal Synaptic TransmissionR01EY014990 · NEI · YALE UNIVERSITY · PI ZENISEK, DAVID PAUL · 2003 to 2015
$5.2M
NEI NIH HHS P30 EY-000785NEI NIH HHS R01 EY014990NEI NIH HHS R01-EY-014990
6 · The paper itself

Abstract

Synaptic ribbons are proteinaceous specialized electron-dense presynaptic structures found in nonspiking sensory cells of the vertebrate nervous system. Understanding the function of these structures is an active area of research (reviewed in Matthews G, Fuchs P. Nat Rev Neurosci 11: 812-822, 2010). Previous work had shown that ribbons could be effectively labeled and visualized using peptides that bind to the synaptic ribbon protein RIBEYE via a PXDLS motif (Zenisek D, Horst NK, Merrifield C, Sterling P, Matthews G. J Neurosci 24: 9752-9759, 2004). Here, we expand on the previous work to develop new tools and strategies for 1) better visualizing synaptic ribbons, and 2) monitoring and manipulating calcium on the synaptic ribbon. Specifically, we developed a new higher-affinity peptide-based label for visualizing ribbons in live cells and two strategies for localizing calcium indicators to the synaptic ribbon.

Indexed as

Amino Acid SequenceAnimalsGoldfishMiceMice, Inbred C57BLMolecular Sequence DataOrgan Culture TechniquesPeptidesPhotoreceptor Cells, VertebratePresynaptic TerminalsProtein BindingRetinaSynapsesZebrafishPeptides

Identifiers

PMID21653726
PMCPMC3154815
OpenAlexW2059245708

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.